Detox Journal Club
Each week, the DETOX journal club meets the latest papers in
evolutionary genetics and plant / animal breeding. After a week of doing
science for work, we can all benefit from the chance to detoxify our systems by
talking in a fun, no-pressure setting. Papers cover all aspects of
evolutionary genetics and breeding, giving us the chance to stay up-to-date on
the literature in our own and related fields.
Regular attendance is not mandatory, just come when you can and/or
when the paper interests you. Attendees do not need to be members or
affiliates of any particular division or group, just scientists at any stage of
their careers who are interested in the topics and papers we'll discuss.
The detox meeting is in-person. We are meeting at Gutenbergterrassen at 5 pm! Don't forget to read your papers.
We meet on Wednesday afternoons at 17:00 at Gutenbergterrassen (https://goo.gl/maps/8wK3c5LwnhpUZm9j7).
The detox is in sleep at the moment until further announcement!
Detox schedule in reverse chronological order:
January 11, 2023:
Taagen et al., 2022. If it ain't broke, don't fix it: evaluating the effect of increased recombination on response to selection for wheat breeding
December 7, 2022:
Zhang et al., 2021.On the use of GBLUP and its extension for GWAS with additive and epistatic effects
November 30, 2022:
Zhao et al., 2017. Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.
November 23, 2022:
Bernerdo., 2009. Should maize doubled haploids be induced among F(1) or F (2) plants?
November 9, 2022:
Ramstein and Buckler., 2022. Prediction of evolutionary constraint by genomic annotations improves functional prioritization of genomic variants in maize.
November 2, 2022:
Beissinger et al., 2016. Recent demography drives changes in linked selection across the maize genome.
October 26, 2022:
Sun et al., 2022.Chromosome-scale and haplotype-resolved genome assembly of a tetraploid potato cultivar.
October 12, 2022:
Detox is canceled due to the CiBreed week.
October 5, 2022:
Yang et al., 2022. Target-oriented prioritization: targeted selection strategy by integrating organismal and molecular traits through predictive analytics in breeding.
September 21, 2022:
Müller et al., 2020. A single gene underlies the dynamic evolution of poplar sex determination.
August 31, 2022:
Barrick et al., 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli.
August 25, 2022:
Zou et al., 2020. Accumulation of genetic variants associated with immunity in the selective breeding of broilers.
August 17, 2022:
Raza et al., 2021. Omics: The way forward to enhance abiotic stress tolerance in Brassica napus L.
August 10, 2022:
Elhaik, 2021. Why most Principal Component Analyses (PCA) in population genetic studies are wrong.
July 27, 2022:
Mason et al., 2017. A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.
July 20, 2022:
Barghi et al., 2017. Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies.
July 13, 2022:
Chao et al., 2022. Genetic loci associated with freezing tolerance in a European rapeseed (Brassica napus L.) diversity panel identified by genome-wide association mapping.
July 6, 2022:
Khunsriraksakul et al., 2022. Integrating 3D genomic and epigenomic data to enhance target gene discovery and drug repurposing in transcriptome-wide association studies.
June 15, 2022:
Rex Bernardo., 2022. Outliers and their distribution in breeding populations.
June 8, 2022:
Birchler and Auger., 2000-2013. Biological Consequences of Dosage Dependent Gene Regulation in Multicellular Eukaryotes.
May 25, 2022:
Michel et al, 2022. Genetic mapping of flowering time and plant height in a maize Stiff Stalk MAGIC population.
May 18, 2022:
No Detox meeting!
May 11, 2022:
L.R. Schaeffer, 2006. Strategy for applying genome-wide selection in dairy cattle
May 4, 2022:
Monroe et al, 2022. Mutation bias reflects natural selection in Arabidopsis thaliana.
March 23, 2022:
Sun et al, 2022.
A role for heritable transcriptomic variation in maize adaptation to temperate
environments.
March 16, 2022:
Montesinor-Lopez et al, 2021. Using
an incomplete block design to allocate lines to environments improves spares
genome-based prediction in plant breeding. And, Gervasi and Schiestl, 2017. Real-time
divergent evolution in plants driven by pollinators.
March 9, 2022:
Montesinor-Lopez et al, 2021. Using
an incomplete block design to allocate lines to environments improves spares
genome-based prediction in plant breeding.
March 2, 2022:
Gervasi and Schiestl, 2017. Real-time
divergent evolution in plants driven by pollinators.
February 23, 2022:
Schouten et al, 2019. Breeding
has increased the diversity of cultivated tomatoes in the Netherlands.
February 16, 2022:
Walkowiak et al, 2020.
Multiple wheat genomes reveal global variation in modern breeding.
February 9, 2022:
Due to the IPK Gatersleben lecture, detox was canceled.
February 2, 2022:
Bernardo,
2016. Bandwagons I, too, have known.
January 26, 2022:
Jayakodi et al, 2020.
The barley pan-genome reveals the hidden legacy of mutation breeding.
January 19, 2022:
Cseh et al, 2021.
Exploring the legacy of Central European historical winter wheat landraces.
January 12, 2022:
He et al, 2015.
Prospects and limits of marker imputation in quantitative genetic studies in
European elite wheat (Triticum aestivum L.).
December 15, 2021:
Zaidi and Mathieson, 2020.
Demographic history mediates the effect of stratification on polygenic scores.
December 8, 2021:
Jensen et al, 2020.
A sorghum practical haplotype graph facilitates genome-wide imputation and
cost-effective genomic prediction.
December 1, 2021:
Campbell et al, 2005.
Demonstrating stratification in a European American population.
November 24, 2021:
Zhao et al, 2018.
Genome-wide association analysis and QTL mapping reveal the genetic control of
cadmium accumulation in maize leaf.
November 17, 2021:
Morales et al, 2021.
Genomic signatures of selection for resistance to stripe rust in Austrian
winter wheat.
November 10, 2021:
Berg et al, 2019. Reduced
signal for polygenic adaptation of height in UK Biobank.
November 3, 2021:
Burke et al, 2014. Standing
genetic variation drives repeatable experimental evolution in outcrossing
populations of Saccharomyces
cerevisiae .
October 27, 2021:
Detox resumes! Burke et al, 2014. Standing
genetic variation drives repeatable experimental evolution in outcrossing
populations of Saccharomyces
cerevisiae .
April 1 - September 30, 2021:
Detox recess for the summer semester.
March 17, 2021
Chen et al, 2021. Genome-wide
identification of agronomically important genes in outcrossing crops using
OutcrossSeq.
March 10, 2021
Wang
et al, 2019. Genotype-by-environment
interactions inferred from genetic effects on phenotypic variability in the UK
Biobank
March 03, 2021
Taagen et al, 2020 . Counting
on Crossovers: Controlled Recombination for Plant Breeding
February 24, 2021
Galiano-Carneiro et al, 2020. Intercontinental
trials reveal stable QTL for Northern corn leaf blight resistance in Europe and
in Brazil
February 17, 2021
Postponed...
February 10, 2021
Barghi et al, 2020. Distinct
Patterns of Selective Sweep and Polygenic Adaptation in Evolve and Resequence
Studies.
February 3, 2021
Malosetti et al, 2013. The
statistical analysis of multi-environment data: modeling
genotype-by-environment interaction and its genetic basis
January 27, 2021
Kim et al, 2021. The
patterns of deleterious mutations during the domestication of soybean.
January 20, 2021
John R Platt, 1964. Strong
Inference.
January 13, 2021
MB
MORRISSEY et al, 2010. The danger
of applying the breeder's equation in observational studies of natural
populations
January 6, 2021
Chris
Schwartz et al, 2020 . CRISPR-Cas9-mediated
75.5-Mb inversion in maize
December 30, 2020
Year end holidays
December 23, 2020
Year end holidays
December 16, 2020
H. Allen Orr, 2005. The
genetic theory of adaptation: a brief history
December 9, 2020
Camus-Kulandaivelu et al, 2006. Maize
Adaptation to Temperate Climate: Relationship Between Population Structure and
Polymorphism in the Dwarf8 Gene.
December 2, 2020 (4:30 pm)
Timothy Beissinger . Reverse
genomic prediction: identifying important traits in breeding populations.
November 25, 2020
Camus-Kulandaivelu
et al, 2006. Maize Adaptation to Temperate Climate: Relationship Between
Population Structure and Polymorphism in the Dwarf8 Gene
November 18, 2020
Bellot et al, 2018. Can
Deep Learning Improve Genomic Prediction of Complex Human Traits?
November 11, 2020
Heslot et al, 2014. Integrating
environmental covariates and crop modeling into the genomic selection framework
to predict genotype by environment interactions.
November 4, 2020
Boer et al, 2007. A
Mixed-Model Quantitative Trait Loci (QTL) Analysis for Multiple-Environment
Trial Data Using Environmental Covariables for QTL-by-Environment Interactions,
With an Example in Maize.
October 28, 2020
Doekes
et al, 2019. Inbreeding depression due
to recent and ancient inbreeding in Dutch Holstein - Friesian dairy cattle.
October 21, 2020
Forsberg
et al, 2017. On the relationship between
epistasis and genetic variance heterogeneity.
October 14, 2020
Heslot et al, 2014. Integrating
environmental covariates and crop modeling into the genomic selection framework
to predict genotype by environment interactions.
October 7, 2020
Romagnon et al, 2019. Comparative
performances of machine learning methods for classifying Crohn's Disease
patients using genome-wide genotyping data.
September 30, 2020
Zhang et al, 2017 . Computer
vision and machine learning for robust phenotyping in genome-wide studies.
September 23, 2020
Khromov et al. 2020. Widespread
selection against deleterious mutations in the Drosophila genome.
September 16, 2020
May et al, 2019. Genome-wide
associations and functional gene analyzes for endoparasite resistance in an
endangered population of native German Black Pied cattle.
September 9, 2020
Soyk et al, 2020. New
Horizons for Dissecting Epistasis in Crop Quantitative Trait Variation.
September 2, 2020
Mollinari et al, 2020 . Unraveling
the Hexaploid Sweetpotato Inheritence Using Ultra-Dense Multilocus Mapping.
August 26, 2020
Ramu et al, 2017. Cassava
haplotype map highlights fixation of deleterious mutations during clonal
propagation.
August 19, 2020
Kou et al, 2020 . Evolutionary
genomics of structural variation in Asian rice (Oryza sativa) domestication.
August 12, 2020
Pinho Morais et al, 2020. Using
public databases for genomic prediction of tropical maize lines
August 5, 2020
Tamiru et al, 2020. Genome
wide association analysis of a stemborer egg induced “call-for-help” defense
trait in maize
July 29, 2020
Chen et al, 2020. The
genetic architecture of the maize progenitor, teosinte, and how it was altered
during maize domestication
July 22, 2020
Tamiru et al, 2020. Genome
wide association analysis of a stemborer egg induced “call-for-help” defense
trait in maize
July 15, 2020
Liu et al, 2019. Trans
Effects on Gene Expression Can Drive Omnigenic Inheritance
July 8, 2020
Boyle et al., 2017. An
expanded view of complex traits: from polygenic to omnigenic
March 18 - July 2, 2020
In light of university restrictions on teaching-related events,
Detox will be temporarily on hold to prevent the spread of Covid-19.
March 11, 2020
Yang et al, 2017 . Concepts,
estimation and interpretation of SNP-based heritability
March 4, 2020
Detox canceled for PhD student
retreat in Schierke.
Xavier
et al, 2018. Genome-Wide Analysis of
Grain Yield Stability and Environmental Interactions in a Multiparental Soybean
Population
Swarts et al, 2017. Genomic
estimation of complex traits reveals ancient maize adaptation to temperate
North America
Detox canceled do to GPZ meeting.
February 5, 2020
Zeng et al , 2018.
Signatures of negative selection in the genetic architecture of human complex
traits
(bonus paper: Guo et al, 2019 )
January 29, 2020
A throw-back detox suggested by Baris. Wear your best 90's
flannel, blazer, or white-washed jeans: Khairallah et al , 1998.
Comparison of QTLs mapped in RILs and their test-cross progenies of
tropicalmaize for insect resistance and agronomic traits
January 22, 2020
Fulop et al, 2016 . A
New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL
Mapping and Gene Identification
January 15, 2020
Detox canceled for the DNPW colloquium. Prof. Scholten will
be present at 4:15 p.m. in room L01.
January 8, 2020
Liu et al, 2019. Genome-wide
identification and analysis of heterotic loci in three maize hybrids
January 1, 2020
No Detox - Public holiday
December 25, 2019
No Detox - Public holiday
December 18, 2019
Monnahan et al. 2015. Epistasis
Is a Major Determinant of Additive Genetic Variance in Mimulus guttatus
December 11, 2019
Roessler et al, 2019. The
genome-wide dynamics of purging during selfing in maize
December 4, 2019
Zhang
et. al. 2019 . The genetic
basis of inbreeding depression in potato
November 27th, 2019
Detox canceled to allow attendance of DNPW colloquium. Prof.
Neugart will be present at 4:15 p.m. in room L01.
November 20, 2019
Novembre et al, 2008 . Gene's
Mirror Geography within Europe.
November 13th, 2019
Detox canceled to attend DNPW colloquium. Tim wants to be
present at 4:15 p.m. in room L01.
November 6th, 2019
Cordell, 2002. Epistasis:
what it means, what it does not mean, and statistical methods to detect it in
humans
October 30th, 2019
Detox canceled to attend DNPW colloquium. Prof. Rostas wants
to present at 4:15 pm in room L01.
October 23, 2019
Kerin et al. 2019. Gene-environment
interactions using a Bayesian whole genome regression model
October 16, 2019
Turner-Hissong, et al. Evolutionary
insights into plant breeding.
October 9th, 2019
Detox canceled due to Eucarpia conference in Munich.
October 2, 2019
Lowry et al. 2019 QTL
× environment interactions underlie adaptive divergence in switchgrass across a
large latitudinal gradient
September 25, 2019
Gage et al. 2018 Selection
Signatures Underlying Dramatic Male Inflorescence Transformation During Modern
Hybrid Maize Breeding
September 18, 2019
Yang et al. 2019 Genome
assembly of a maize incorporated line provides insights into structural
variation and crop improvement
September 11th, 2019
Uricchio 2019 Evolutionary
perspectives on polygenic selection, missing heritability, and GWAS
September 4, 2019
Voss-Fels et al. 2019 Breeding
improves wheat productivity under contrasting agrochemical input levels
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Detox Hiatus: 2018- July 2019
Detox wants to take a break while relocates from Missouri, USA to
Göttingen, Germany. If you are at MU, check out the DataPhiles group
instead! Info here: DataPhiles! http://elizabethking.org/DataPhiles/
February 2018
February 22 Detox Extravaganza / Tim Send off
To celebrate Tim's last Detox in Columbia, we'll spend an hour
discussing each of the following three papers at three different
locations. We'll start at Craft Beer Cellar an hour ago than usual, at
4:00, to discuss citrus domestication (paper # 1). At 5:00 we'll grab food
at Seol Taco before heading to Gunter Hans to talk about earth-GWAS (paper #
2). At 6:00 we'll go to The Understudy where we'll discuss the power of
PCA (paper # 3).
Wu et al. 2018 Genomics
of the origin and evolution of Citrus
Lin et al. 2017 Substantial
contribution of genetic variation in the expression of transcription factors to
phenotypic variation revealed by eRD-GWAS
Novembre
et al. 2008 Genes mirror geography
within Europe
February 15
Pitchers et al. 2017 The
power of a multivariate approach to genome-wide association studies: shape An
example with Drosophila melanogaster wing Dr. Dworkin
wants to give a DBS seminar on Feb 20!
February 8th
Instead of detox, consider attending the MU Plant
Research Symposium
February 1
Mathew et al. Detection of
Epistasis for Flowering Time Using Bayesian Multilocus Estimation in a Barley
MAGIC Population
Jan 2018
January 25th
Tilk et al. High
accuracy haplotype-derived allele frequencies from ultra-low coverage pool-seq
samples
Jan 18
Zhao and Begun Genomics
of parallel adaptation at two timescales in Drosophila
January 11th
Zhao and Begun Genomics
of parallel adaptation at two timescales in Drosophila Canceled
due to hazardous weather
January 4th
Cornejo et al .
Genomic insights into the domestication of the chocolate tree, Theobroma cacao
L.
December 2017
December 28th
Like the rest of the University, Detox wants to be closed this
week. Happy New Year!
December 21st
Senn 2011 Francis
Galton and regression to the mean
December 14th
Schrider and Kern, 2017 Machine
Learning for Population Genetics: A New Paradigm
December 7th
Falconer 1992 Early
Selection Experiments
November 2017
November 30th
Gage et al. 2017 The
effect of artificial selection on phenotypic plasticity in maize
Nov 16 #TBT
Falconer 1992 Early
Selection Experiments
November 9th
Santos et al. Taxon-restricted
genes at the origin of a novel access to a new environment
November 2
Bosse et al. Recent natural
selection causes adaptive evolution of an avian polygenic trait
October 2017
October 26th
Chari et al. Compensatory
evolution via cryptic genetic variation: Distinct trajectories to phenotypic
and fitness recovery
October 19
Yang et al. Incomplete dominance
of deleterious alleles contributes substantially to trait variation and
heterosis in maize We're going to Lucky's Market again
this week. Soon we'll vote on the regular
destination. Location: https://goo.gl/maps/PvqDdt842az
October 12
Noa
Liscovitch-Brauer et al. Trade-off between Transcriptome
Plasticity and Genome Evolution in Cephalopods We're
going to give Lucky's Market a try this week. Instead of Craft Beer
Cellar, we'll meet at Lucky's. Location: https://goo.gl/maps/PvqDdt842az
october 5
Goiffon et al. Improving
Response in Genomic Selection with a Population-Based Selection Strategy:
Optimal Population Value Selection
September 2017
Sep 28
Edwards et al. Genomic
Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene
Ontology Categories in Drosophila melanogaster
Sep 21
Bromham et al. Exploring the
Relationships between Mutation Rates, Life History, Genome Size, Environment,
and Species Richness in Flowering Plants
Sep 14
Alguillon et al. Deconstructing
isolation-by-distance: The genomic consequences of limited dispersal
Sep 7
No Detox - Go to the Tomato festival!
August 2017
Aug 31
Guerrero et al. Pervasive
antagonistic interactions among hybrid incompatibility loci
Aug 24
Swarts et al. Genomic estimation
of complex traits reveals ancient maize adaptation to temperate North America
Aug 17
Noble et al. Polygenicity and
epistasis underlie fitness-proximal traits in the Caenorhabditis elegans
multiparental experimental evolution (CeMEE) panel
Aug 10
Cheng et al. Subgenome parallel
selection is associated with morphotype diversification and convergent crop
domestication in Brassica rapa and Brassica oleracea
August 3
Venkat et al Multinucleotide
mutations cause false inferences of positive selection
July 2017
July 27
Grauer An upper limit on
the functional fraction of the human genomeXs
July 20
Monnahan and Kelly The
Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus
guttatus
July 13
Fleming et al. Genomic
Comparison of Indigenous African and Northern European Chickens Reveals
Putative Mechanisms of Stress Tolerance Related to Environmental Selection
Pressure
July 6
Boyle et al. An Expanded View of
Complex Traits: From Polygenic to Omnigenic
June 2017
June 29
Zhou et al. The
Evolutionary Genomics of Grape (Vitis vinifera ssp. Vinifera) Domestication
June 22
Liu et al. Iterative Usage of
Fixed and Random Effect Models for Powerful and Efficient Genome-Wide
Association Studies
June 15
Han et al. Clustering of 770,000
genomes reveals post-colonial population structure of North America
June 8
Malinski et al. Whole Genome
Sequences Of Malawi Cichlids Reveal Multiple Radiations Interconnected By Gene
Flow
June 1
Sauvage et al. Domestication
rewired gene expression and nucleotide diversity patterns in tomato
May 2017
May 25
Chan et al. The Complex Genetic
Architecture of the Metabolome
May 18
Barber and Elde Escape
from bacterial iron piracy through rapid evolution of transferrin
May 11
Shen et al. Contentious
relationships in phylogenomic studies can be driven by a handful of genes
may 4
Huang et al. Experimental
Evolution of Gene Expression and Plasticity in Alternative Selective Regimes
April 2017
Apr 27
Zhang et al. Genetic Basis of
Melanin Pigmentation in Butterfly Wings
Apr 20
Thalmann et al. The evolution of
sex-linked barring alleles in chickens involves both regulatory and coding
changes in CDKN2A In honor of my new backyard chicks, which
include one of the type described here
Apr 13
Forsberg and Carlborg On
The Relationship Between Epistasis And Genetic Variance-Heterogeneity
April 6th
Porto et al. Evolution of the
Genotype-to-Phenotype Map and the Cost of Pleiotropy in Mammals
March 2017
March 30
Graves et al. Genomics of
Parallel Experimental Evolution in Drosophila
March 23
Burke et al. Standing Genetic
Variation Drives Repeatable Experimental Evolution in Outcrossing Populations
of Saccharomyces cerevisiae
March 16
Forsberg et al. Accounting for
genetic interactions improves modeling of individual quantitative trait
phenotypes in yeast
March 9
Josephs et al. What can
genome-wide association studies tell us about the evolutionary forces
maintaining genetic variation for quantitative traits?
March 2
Imprialou et al. Genomic
Rearrangements Considered as Quantitative Traits
February 2017
February 23 This discussion will be in
anticipation of Ruth Shaw's BioSci seminar the following Tuesday, February 28
Shaw and Shaw Quantitative
genetic study of the adaptive process
February 16
Nam et al. Evidence that the
rate of strong selective sweeps increases with population size in the great apes
February 9
Lillie et al. Genome-wide
standing variation facilitates long-term response to bidirectional selection
for antibody response in chickens
February 2
Instead of Detox, go to the MU Pioneer
Plant Science Symposium !
Jan 2017
Jan 26
Siddiq et al, 2016 Experimental
test and refutation of a classic case of molecular adaptation in Drosophila
melanogaster
Jan 19
Brzyski et al, 2017 Controlling
the Rate of GWAS False Discoveries
Jan 12
No detox
Jan 5
No detox
December 2016
December 29
No Detox -- You should be writing!
Dec 22
No Detox -- Read on your own
December 15
No Detox -- Good luck on finals!
December 8
Sicard et al, 2016 Standing
genetic variation in a tissue-specific enhancer underlies selfing-syndrome
evolution in Capsella
December 1
Yang et al, 2016 Incomplete
dominance of deleterious alleles contribute substantially to trait variation
and heterosis in maize
November 2016
Thursday, November 24, 2016
thanksgiving Discuss a good paper with non-scientist family
and friends!
Thursday, November 17, 2016
Gould et al Pooled ecotype
sequencing reveals candidate genetic mechanisms for adaptive differentiation
and reproductive isolation
Thursday, November 10, 2016
Natarajan et al Predictable
convergence in hemoglobin function has unpredictable molecular underpinnings
Thursday, November 3, 2016
Petkova et al Visualizing
spatial population structure with estimated effective migration surfaces
October 2016
Thursday, October 27, 2016
Yang et al Common SNPs explain a large
proportion of the heritability for human height
Thursday, October 20, 2016
Bosse et al Artificial selection
on introduced Asian haplotypes shaped the genetic architecture in European
commercial pigs
Thursday, October 13, 2016
Johnsson et al Feralization
targets different genomic loci to domestication in the chicken
Thursday, October 6, 2016
Zhao et al. Breeding signature
of combining ability improvement revealed by a genomic variation map from
recurrent selection population in Brassica napus
September 2016
Thursday, September 29, 2016
Rougemont et al. Inferring the
demographic history underlying parallel genomic divergence among pairs of
parasitic and nonparasitic lamprey ecotypes
Thursday, September 22, 2016
Abdollahi-Arpanahi et al. Differential
contribution of genomic regions to marked genetic variation and prediction of
quantitative traits in broiler chickens
Thursday, September 15, 2016, We'll have an
important visitor, Sarah Turner from the University of Wisconsin, participating
in this Detox
Josephs and Wright On the Trail of
Linked Selection
Thursday, September 8, 2016, this will be good
reading before John Kelly's IPG seminar on September 12
Kelly et al. The Genomic Signal
of Partial Sweeps in Mimulus guttatus
Thursday, September 1, 2016
Martin and Orgogozo The Loci of
Repeated Evolution: A Catalog of Genetic Hotspots of Phenotypic Variation
August 2016
Thursday, August 25, 2016
Schrider et al. Effects of
linked selective sweeps on demographic inference and model selection
Thursday, August 18, 2016
Lamichhaney et al. A beak size
locus in Darwin's finches facilitated character displacement during a drought
Thursday, August 11, 2016
Schrider et al. Effects of
linked selective sweeps on demographic inference and model selection
Thursday, August 4, 2016
Lan et al. Coregulation of
tandem duplicate genes slows evolution of subfunctionalization in mammals
July 2016
Thursday, July 28, 2016
Fuchsberger et al. The genetic
architecture of type 2 diabetes
Thursday, July 21, 2016
Boyko et al. A Simple Genetic
Architecture Underlies Morphological Variation in Dogs
Thursday, July 14, 2016
Battagin et al. Effect of
manipulating recombination rates on response to selection in livestock breeding
programs
NOTE FOR JULY 14: We will try meeting at Gunter Hans (7 Hitt
Street) for a change of pace
Thursday, July 7, 2016
Merotto et al. Evolutionary and
social consequences of introgression of NON-transgenic herbicide resistance
from rice to weedy rice in Brazil
June 2016
Thursday June 30, 2016
Mitteroecker et al. Multivariate
Analysis of Genotype - Phenotype Association
Tuesday June 23, 2016
Tian et al. The Dissection of
Expression Quantitative Trait Locus Hotspots
Tuesday June 16, 2016
Sadhu et al. CRISPR-directed
mitotic recombination enables genetic mapping without crosses
Thursday June 9, 2016
Dittmar et al. Factors
influencing the effect size distribution of adaptive substitutions
Thursday June 2, 2016
Gallaher et al. Chlamydomonas
Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation,
Identifies True Strain Histories, and Enables Strain-Specific Studies
May 2016
Thursday, May 26, 2016
Detox canceled due to conflict with IPG
Symposium .
Thursday, May 19, 2016
Field et al. Detection of human
adaptation during the past 2,000 years
Thursday, May 12, 2016
Barrett and Hoekstra Molecular
spandrels: tests of adaptation at the genetic level
Thursday, May 5, 2016
McManus et al. Population
Genetic Analysis of the DARC Locus (Duffy) Reveals Adaptation from Standing
Variation Associated with Malaria Resistance in Humans
April 2016
Thursday April 28, 2016
Wang et al. Positive selection
rather than relaxation of functional constraint drives the evolution of vision
during chicken domestication
Thursday April 21, 2016
Allaby et al. Surprisingly low
limits of selection in plant domestication
Thursday April 14, 2016
Boitard et al. Inferring
Population Size History from Large Samples of Genome-Wide Molecular Data - An
Approximate Bayesian Computation Approach
Thursday April 7, 2016
Sheehan and Song Deep
learning for population genetic inference
March 2016
Thursday March 31, 2016
Pavlidis et al. A Critical Assessment
of Storytelling: Gene Ontology Categories and the Importance of Validating
Genomic Scans
Thursday, March 24, 2016
Zhang et al. Genome Resequencing
Identifies Unique Adaptations of Tibetan Chickens to Hypoxia and High-dose
Ultraviolet Radiation in High-altitude Environments
Thursday March 17, 2016
Lamichhaney et al. Population-scale
sequencing reveals genetic differentiation due to local adaptation in Atlantic
herring
Thursday, March 10, 2016 ( Requested
by Libby )
Huang et al. Epistasis dominates
the genetic architecture of Drosophila quantitative traits
Thursday March 3, 2016
MacLeod et al. Exploiting
biological priorities and sequence variants enhances QTL discovery and genomic
prediction of complex traits
February 2016
Thursday, February 25, 2016
Swinnen et al. Lessons from
Domestication: Targeting Cis-Regulatory Elements for Crop Improvement
Thursday, February 18, 2016
Davies et al. Re-engineering the
zinc fingers of PRDM9 reverses hybrid sterility in mice
Thursday, February 11, 2016
Cubillos, et al. High-Resolution
Mapping of Complex Traits with a Four-Parent Advanced Intercross Yeast
Population
Thursday, February 4, 2016
Rausher and Delph Commentary:
When does understanding phenotypic evolution require identification of the
underlying genes?
Jan 2016
Thursday, January 28
Decker et al. A novel analytical
method, Birth Date Selection Mapping, detects response of the Angus (Bos
taurus) genome to selection on complex traits
Thursday, January 21, 2016
Marsden et al. Bottlenecks and selective sweeps during domestication have increased deleterious genetic variation in dogs
Thursday, January 14, 2016
Henn, et al. Distance from sub-Saharan Africa predicts mutational load in diverse human genomes
Thursday, January 7, 2016
No Detox - Winter Holiday
December 2015
Thursday December 31, 2015
No Detox - Winter Holiday
Thursday, December 24, 2015
No Detox - Winter Holiday
Thursday, December 17, 2015
Sellis, et al. Empirical evidence for heterozygous advantage in adapting diploid populations of Saccharomyces cerevisiae
Thursday, December 10, 2015
Exome Aggregation Consortium et al. Analysis of protein-coding genetic variation in 60,706 humans
Thursday, December 3, 2015
Lamichhaney et al. Structural genomic changes underlying alternative reproductive strategies in the ruff ( Philomachus pugnax )
November 2015
Thursday, November 26, 2015
No DETOX - Thanksgiving
Thursday, November 19, 2015 ( 5pm start )
Monnahan et al. Epistasis Is a Major Determinant of the Additive Genetic Variance in Mimulus guttatus
Thursday November 12, 2015
Mikheyev et al., 2015 Museum samples reveal rapid evolution by wild honey bees exposed to a novel parasite