SFB 755 - Nanoscale Photonic Imaging
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Jahn, T., Wilke, R., Chushkin, Y. and Salditt, T. (C01)
How many photons are needed to reconstruct random objects in coherent X-ray diffractive imaging?
Acta Cryst., 73: 2053-2733, DOI:doi.org/10.1107/S20532733160


Müller, M., Mey, T., Niemeyer, J., Lorenz, M. and Mann, K. (C04)
Table-to Soft X-ray Microscopy with a Laser-induced Plasma Source Based on a Pulsed Gas-jet
AIP Conference Proceedings, 1764, DOI:10.1063/1.4961137

Müller, M., Mey, T., Niemeyer, J., Lorenz, M. and Mann, K. (C04)
Table-to Soft X-ray Microscopy with a Laser-induced Plasma Source Based on a Pulsed Gas-jet
AIP Conference Proceedings, 1764, DOI:10.1063/1.4961137

Kühl, F.-C., Müller, M., Schellhorn, M., Mann K., W. S. and Eusterhues, K. (C. (C04)
Near-edge x-ray absorption fine structure spectroscopy at atmospheric pressure with a table-top laser-induced soft x-ray source
Journal of Vacuum Science & Technology, A 34(4): 041302, DOI:10.1116/1.4950599

Yalunin, S., Schröder, B. and Ropers, C. (C08)
Theory of electron energy loss near plasmonic wires, nanorods, and cones
Rhysical Review B, 93: 115408, DOI:10.1103/PhysRevB.93.115408

Prabhune, M., v. Roden, K., Rehfeldt, F. and Schmidt, C. (A03)
Sulfo-SMCC prevents annealing of taxol-stabilized microtubules in vitro
PLOS ONE, DOI:10.1371/journal.pone.0161623

Töpperwien, M., Krenkel, M., Quade, F. and Salditt, T. (C01)
Laboratory-based x-ray phase-contrast tomography enables 3D virtual histology
Proc. SPIE 9964, Advances in Laboratory-based X-Ray Sources, Optics, and Applications V, 99640I, DOI:10.1117/12.2246460

Töpperwien, M., Krenkel, M., Müller, K. and Salditt, T. (C01)
Phase-contrast tomography of neuronal tissues: from laboratory- to high resolution synchrotron CT
Proc. SPIE 9967, Developments in X-Ray Tomography X, 99670T, DOI:10.1117/12.2238496

Lopez, C. G., Saldanha, O., Huber, K. and Köster, S. (B07)
Lateral association and elongation of vimentin intermediate filament proteins: A time-resolved light-scattering study
PNAS, 113(40): 11152 ? 11157, DOI:10.1073/pnas.1606372113

Kramer, S. C., Hagemann, J., Künneke, L. and Lebert, J. (C01)
Parallel Statistical Multiresolution Estimation for Image Reconstruction
SIAM Journal on Scientific Computing, 38(5): C533-C559, DOI:10.1137/15M1020332

Saldanha, O., Brennich, M. E., Burghammer, M., Herrmann, H. and Köster, S. (B07)
The filament forming reactions of vimentin tetramers studied in a serial-inlet microflow device by small angle x-ray scattering
AIP Biomicrofluidics, 10: 024108, DOI:10.1063/1.4943916

Prabhune, M., von Roden, K., Rehfeldt, F. and Schmidt, C. F. (A03)
Sulfo-SMCC Prevents Annealing of Taxol-Stabilized Microtubules In Vitro
PLoS ONE, 11, DOI:10.1371/journal.pone.0161623

Kunnus, K., Josefsson, I., Rajkovic, I., Quevedo, W., Beye, M., Weniger, C. and Grübel, S. (B03, B10)
Identification of the dominant photochemical pathways and mechanistic insights to the ultrafast ligand exchange of Fe(CO)5 to Fe(CO)4EtOH
STRUCTURAL DYNAMICS, 3(3): 043204, DOI:10.1063/1.4941602

Aspelmeier, T., Charitha, C. and Luke, D. (A04)
Local Linear Convergence of the ADMM/Douglas--Rachford Algorithms without Strong Convexity and Application to Statistical Imaging
SIAM J. Imaging Sciences

Beinert, R. (C11)
preprint as download Non-negativity constraints in the one-dimensional

Charitha, C., Dutta, J. and R.D., L. (A04, C02)
Lagrange multipliers, (exact) regularization and error bounds for monotone variational inequalities
Lagrange multipliers, (exact) regularization and error bounds for monotone variational inequalities, DOI:10.1007/s10107-016-1022-6

Beinert, R. (C11)
preprint as download One-dimensional phase retrieval with additional interference measurements

Beinert, R. and Plonka, G. (C11)
preprint as download Enforcing uniqueness in one-dimensional phase retrieval by additional signal information in time domain

Walczak, M. and Grubmüller, H. (B04)
BASDet:Bayesian approach(es) for structure determination from single molecule X-ray diffraction images
Computer Physics Communications, 201: 159-166

The circular SiZer, inferred persistence of shape parameters and application to early stem cell differentiation
Bernoulli, 22(4): 2113?2142, DOI:10.3150/15-BEJ722

Jain, R., Khan, N., Menzel, A., Rajkovic, I., Konrad, M. and Techert, S. (B10)
Insights into open/closed conformations of the catalytically active human guanylate kinase as investigated by small-angle X-ray scattering.
Eur Biophys J, 45(1), DOI:10.1007/s00249-015-1079-9

Wallentin, J., Osterhoff, M. and Salditt, T. (C01)
In Operando X-Ray Nanodiffraction Reveals Electrically Induced Bending and Lattice Contraction in a Single Nanowire Device
Advanced materials, 28: 1788-1792, DOI:10.1002/adma.201504188

Hemonnot, C. J., Reinhardt, J., Saldanha, O., Patommel, J., Graceffa, R., Weinhausen, B., Burghammer, M., Schroer, C. G. and Köster, S. (C10)
X-Rays Reveal the Internal Structure of Keratin Bundles in Whole Cells
ACS Nano, 10(3): 3553-3561, DOI:10.1021/acsnano.5b07871

Bernhardt, M., Priebe, M., Osterhoff, M., Wollnik, C., Diaz, A., Salditt, T. and Rehfeldt, F. (B08, C01)
X-Ray Micro- and Nanodiffraction Imaging on Human Mesenchymal Stem
Cells and Differentiated Cells

Biophysical Journal, 110(3): 680-690, DOI:10.1016/j.bpj.2015.12.017

Krenkel, M., Töpperwien, M., Dullin, C., Alves, F. and Salditt, T. (C01)
Propagation-based phase-contrast tomography for high-resolution lung imaging with laboratory sources
AIP Advances, 6: 035007, DOI:10.1063/1.4943898

Ruhlandt, A. and Salditt, T. (C01)
Three-dimensional propagation in near-field tomographic X-ray phase retrieval
ActaCryst., A72: 215?221, DOI:org/10.1107/S2053273315022469

Vassholz, M., Koberstein-Schwarz, B., Ruhlandt, A., Krenkel, M. and Salditt, T. (C01)
New X-Ray Tomography Method Based on the 3D Radon Transform Compatible with Anisotropic Sources

Zayko, S., M., S., Schäfer, S. and Ropers, C. (C08)
Polarization contrast of nanoscale waveguides in high harmonic imaging
Optica, 3(3): 240, DOI:org/10.1364/OPTICA.3.000239

König, C., Werner, F. and Hohage, T. (A04 and C02)
Society for Industrial and Applied Mathematics, 54(1): 341?360, DOI:10.1137/15M1022252

Maretzke S. and Bartels, M., Krenkel, M., Salditt, T. and Hohage, T. (2016)
Regularized Newton methods for x-ray phase contrast and general imaging problems
OPTICS EXPRESS, 24(6): 6490, DOI:10.1364/OE.24.006490

Böhm, U., Hell, S. W. and Schmidt, R. (A01)
4Pi-RESOLFT nanoscopy
NATURE COMMUNICATION, DOI:DOI: 10.1038/ncomms10504


Aspelmeier, T., Egner, A. and Munk, A. (A06)
Modern Statistical Challenges in High-Resolution Fluorescence Microscopy
Annual Review of Statistics and Its Application, 2: 163-202, DOI:10.1146/annurev-statistics-010814-020343

Hartmann, A., Huckemann, S., Dannemann, J., Laitenberger, O., Geisler, C., Egner, A. and Munk, A. (A04, B08)
Drift estimation in sparse sequential dynamic imaging, with application to nanoscale fluorescence microscopy
Journal of the Royal Statistical Society: Series B (Statistical Methodology), DOI:doi: 10.1111/rssb.12128

Charitha, C., Dutta, J. and Luke, D. (A04, C02)
Lagrange Multipliers, (Exact) Regularization and Error Bounds for Monotone Variational Inequalities

Hesse, R., Luke, D., Sabach, S. and Tam, M. (C02)
Proximal Heterogeneous Block Implicit-Explicit Method and Application to Blind Ptychographic Diffraction Imaging
SIAM J. on Imaging Science, 8(1): 426-457

Peter, P., Weickert, J., Munk, A., Krivobokova, T. and Li, H. (A04, B08)
Justifying Tensor-Driven Diffusion from Structure-Adaptive Statistics of Natural Images
Energy Minimization Methods in Computer Vision and Pattern Recognition,,(Volume 8932 of the series Lecture Notes in Computer Science): 263-277

Munk, A. and Werner, F. (A07)
Discussion of "Hypotheses testing by convex optimization"
Electronic Journal of Statistics, 9(2): 1720-1722

Ta, H., Keller, J., Haltmeier, M., Saka, S. K., Schmied, J., Opazo, F., Tinnefeld, P., Munk, A. and 1, S. W. H. (A07)
Mapping molecules in scanning far-field fluorescence nanoscopy
NATURE COMMUNICATIONS, 6: 1-7, DOI:10.1038/ncomms8977

Mey, T., Zayko, S., Ropers, C., Schäfer, B. and Mann, K. (C08)
Toroidal grating astigmatism of high-harmonics characterized by EUV Hartmann sensor
Optics Express, 23: 15310-15315, DOI:10.1364/OE.23.015310

Keitel, B., Plönjes, E., Kreis, S., Kuhlmann, M., Tiedtke, K., Mey, T., Schäfer, B. and Mann, K. (C08)
Hartmann wavefront sensors and their application at FLASH
JOURNAL OF SYNCHROTRONRADIATION, 23: 43-49, DOI:10.1107/S1600577515020354

Block, J., Schroeder, V., Pawelzyk, P., Willenbacher, N. and Köster, S. (B07, C10)
Physical properties of cytoplasmic intermediate filaments
ELSEVIER, 1853: 3053, DOI:doi:10.1016/j.bbamcr.2015.05.009

T. Salditt, Hoffmann, S., Vassholz, M., Haber, J., Osterhoff, M. and Hilhorst, J. (C01)
X-Ray Optics on a Chip: Guiding X Rays in Curved Channels
Physical Review Letters, 115: 203902, DOI:10.1103/PhysRevLett115.203902

Gruner, P., B. Riechers B. Semin, J. L. A. J. K. S. and Baret, J.-C. (B12)
Controlling molecular transport in minimal emulsions
Nature Communicatons, DOI:Doi: 10.1038

Wiederschein, F., Vöhringer-Martinez, E., Beinsen, A., Postberg, F., Schmidt, J., Srama, R., Stolz, F., Grubmüller, H. and Abel, B. (B04)
Charge separation and isolation in strong water droplet impacts
Phys.Chem.Chem.Phys., 17: 6858, DOI:10.1039/c4cp05618c

Wallentin, J., Wilke, R. N., Osterhoff, M. and Salditt, T. (2015)
Simultaneous high-resolution scanning Bragg contrast and ptychographic imaging of a single solar cell nanowire
Journal of Applied Crystallography, 48: 1818

Markus Osterhoff, Florian Döring, Christian Eberl, Robin Wilke, J. Wallentin, Hans-Ulrich Krebs, M. Sprung, Tim Salditt (C12)
Progress on multi-order hard x-ray imaging with multilayer zone plates
Proc. SPIE 9592, X-Ray Nanoimaging: Instruments and Methods II, 9592, DOI:10.1117/12.2187799

Eberl C.; Osterhoff, M. Döring. F.; Krebs. H.-U. (C12)
MZP design and fabrication for efficient hard x-ray nano-focusing and imaging
Proc. SPIE 9588, Advances in X-Ray/EUV Optics and Components X, DOI:10.1117/12.2187788

Robisch, A.-L., Kröger, K., Rack, A. and Salditt, T. (C01)
Near-field ptychography using lateral and longitudinal shifts
New J. Phys., 17: 073033, DOI:10.1088/1367-2630/17/7/073033

Chen, H.-Y., Hoffmann, S. and Salditt, T. (C01)
X-ray beam compression by tapered waveguides
Appl. Phys. Lett., 106: 194105, DOI:10.1063/1.4921095

Eltzner, B., Wollnik, C., Gottschlich, C., Huckemann, S. and Rehfeldt, F. (B08)
The Filament Sensor for Near Real-Time Detection of Cytoskeletal Fiber Structures
PLOS ONE: 1-16, DOI:10.1371/journal.pone.0126346

Beinert, R. and Plonka, G. (2015)
Ambiguities in One-Dimensional Discrete Phase Retrieval from Fourier Magnitudes
J Fourier Anal Appl, DOI:10.1007/s00041-015-9405-2

Maretzke, S. (C02, C02)
A uniqueness result for propagation-based phase contrast imaging from a single measurement
Inverse Problems, 31: 065003, DOI:http://dx.doi.org/10.1088/0266-5611/31/6/065003

Martin Krenkel, Andrea Markus, Matthias Bartels, Christian Dullin, Frauke Alves, and Tim Salditt (C01)
Phase-contrast zoom tomography reveals precise locations of macrophages in mouse lungs
Scientific Reports, 5:09973, DOI:10.1038/srep09973

Bartels, M., Krenkel, M., Haber, J., Wilke R. N. and Salditt, T. (C01)
X-Ray Holographic Imaging of Hydrated Biological Cells in Solution
Phys. Rev. Lett., 114(4): 048103, DOI:10.1103/PhysRevLett.114.048103

Heidemann, K. M., Sharma, A., Rehfeldt, F., Schmidt, C. F. and Wardetzky, M. (A03)
Elasticity of 3D networks with rigid filaments and compliant crosslinks
Soft Matter, 11: 343-354, DOI:10.1039/C4SM01789G

Homann, C., Hohage, T., Hagemann, J., Robisch, A. and Salditt, T. (C01, C02)
Validity of the empty-beam correction in near-field imaging
Phys. Rev. A, 91: 013821, DOI:10.1103/PhysRevA.91.013821

Koester, S., Weitz, D. A., Goldman, R. D., Aebi, U. and Herrmann, H. (B07,C10)
Intermediate filament mechanics in vitro and in the cell: from coiled coils to filaments, fibers and networks
Current Opinion in Cell Biology, 32: 82 - 91, DOI:10.1016/j.ceb.2015.01.001

Osterhoff, M., Eberl, C., Döring, F., Wilke, R., Wallentin, J., Krebs, H., Sprung, M. and Salditt, T. (C01, C04)
Towards multi-order hard x-ray imaging with multilayer zone plates
J. Apply. Cryst.open access,, 48: 116-124, DOI:10.1107/S1600576714026016

Werner, F. (C09)
On convergence rates for iteratively regularized Newton-type methods under a Lipschitz-type nonlinearity condition
J. Inverse Ill-Posed Probl., DOI:10.1515/jiip-2013-0074


Haltmeier, M. and Munk, A. (A04)
Extreme value analysis of empirical frame coefficients and implications for denoising by soft-thresholding
Applied and Computational Harmonic Analysis, 36(3): 434-460, DOI:10.1016/j.acha.2013.07.004

Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
Restricted normal cones and sparsity optimization with affine constraints
Foundations of Computational Mathematicsopen access,, 14(1): 63, DOI:10.1007/s10208-013-9161-0

Brennich, M. E., Bauch, S., Vainio, U., Wedig, T., Herrmann, H. and Köster, S. (B07)
Impact of ion valency on the assembly of vimentin studied by quantitative small angle X-ray scattering
Soft Matter, 10(12): 2059, DOI:10.1039/c3sm52532e

Charitha, C., Dutta, J. and Lalitha, C. S. (A04)
Gap functions for vector variational inequalities
OptimizationTaylor & Francis,(March): 1-22, DOI:10.1080/02331934.2014.888556

Dammann, C. and Köster, S. (B07)
Dynamics of counterion-induced attraction between vimentin filaments followed in microfluidic drops.
Lab Chip, 14(15): 2681-7, DOI:10.1039/c3lc51418h

Debnarova, A., Techert, S. and Schmatz, S. (B03)
Contribution of Coulomb explosion to form factors and mosaicity spread in single particle X-ray scattering.
Phys. Chem. Chem. Phys., 16(2): 792-8, DOI:10.1039/c3cp54011a

Eberl, C., Döring, F., Liese, T., Schlenkrich, F., Roos, B., Hahn, M., Hoinkes, T., Rauschenbeutel, A., Osterhoff, M., Salditt, T. and Krebs, H.-U. (C04,C12)
Fabrication of laser deposited high-quality multilayer zone plates for hard X-ray nanofocusing
Appl. Surf. Sci., 307: 638-644, DOI:10.1016/j.apsusc.2014.04.089

Frick, K., Munk, A. and Sieling, H. (A07)
Multiscale change point inference
J. R. Stat. Soc. Ser. B (Statistical Methodol., 76(3): 495-580, DOI:10.1111/rssb.12047

Graen, T. M. D., Hoefling, M. and Grubmüller, H. (A05)
AMBER-DYES: Characterization of Charge Fluctuations and Force Field Parameterization of Fluorescent Dyes for Molecular Dynamics Simulations
J. Chem. Theory Comput., DOI:10.1021/ct500869p

Hafi, N., Grunwald, M., van den Heuvel, L. S., Aspelmeier, T., Chen, J.-H., Zagrebelsky, M., Schütte, O. M., Steinem, C., Korte, M., Munk, A. and Walla, P. J. (A04,A06)
Fluorescence nanoscopy by polarization modulation and polarization angle narrowing.
Nat. Methods, 11(5): 579-84, DOI:10.1038/nmeth.2919

Hagemann, J., Robisch, A. and Luke, D. (C01,C02)
Reconstruction of wave front and object for inline holography from a set of detection planes
Opt. Express, 22(10): 195-202, DOI:10.1364/OE.22.011552

Hartmann, A., Huckemann, S., Dannemann, J., Laitenberger, O., Geisler, C., Egner, A. and Munk, A. (A06,B08)
Drift Estimation in Sparse Sequential Dynamic Imaging: with Application to Nanoscale Fluorescence Microscopy
arXivopen access,

Hesse, R., Luke, D. R. and Neumann, P. (A04,C02)
Alternating Projections and Douglas-Rachford for Sparse Affine Feasibility
IEEE Trans. Signal Process., 62(18): 4868-4881, DOI:10.1109/TSP.2014.2339801

Hesse, R., Luke, D. R., Sabach, S. and Tam, M. K. (C02)
Proximal Heterogeneous Block Input-Output Method and application to Blind Ptychographic Diffraction Imaging
arXiv: 1-32

Hohage, T. and Homann, C. (C02)
A Generalization of the Chambolle-Pock Algorithm to Banach Spaces with Applications to Inverse Problems
arXiv: 1

Honigmann, A., Mueller, V., Ta, H., Schoenle, A., Sezgin, E., Hell, S. W. and Eggeling, C. (B11)
Scanning STED-FCS reveals spatiotemporal heterogeneity of lipid interaction in the plasma membrane of living cells.
Nat. Commun.Nature Publishing Group,, 5: 5412, DOI:10.1038/ncomms6412

Jensen, N. a., Danzl, J. G., Willig, K. I., Lavoie-Cardinal, F., Brakemann, T., Hell, S. W. and Jakobs, S. (B10)
Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang.
Chemphyschem, 15(4): 756-62, DOI:10.1002/cphc.201301034

Kaliman, S., Jayachandran, C., Rehfeldt, F. and Smith, A.-S. (A03,B08)
Novel growth regime of MDCK II model tissues on soft substrates.
Biophys. J., 106(7): L25-8, DOI:10.1016/j.bpj.2013.12.056

Kia, R., Scholz, M., Raithby, P. R. and Techert, S. (B03)
Homoleptic tetraazaphenanthrene-based copper(I) complexes: Synthesis, spectroscopic characterization, crystal structures and computational studies
Inorganica Chim. ActaElsevier B.V.,, 423: 348-357, DOI:10.1016/j.ica.2014.08.052

Loock, S. and Plonka, G. (C11)
Phase retrieval for Fresnel measurements using a shearlet sparsity constraint
Inverse Probl., 30(5): 055005, DOI:10.1088/0266-5611/30/5/055005

Müller, M., Mey, T., Niemeyer, J. and Mann, K. (C04)
Table-top soft x-ray microscope using laser-induced plasma from a pulsed gas jet.
Opt. Express, 22(19): 23489-95, DOI:10.1364/OE.22.023489

Maretzke, S. (C02)
A uniqueness result for propagation-based phase contrast imaging from a single measurement
arXiv: 1

Mey, T., Schäfer, B., Mann, K., Keitel, B., Kuhlmann, M. and Plönjes, E. (C08)
Wigner distribution measurements of the spatial coherence properties of the free-electron laser FLASH.
Opt. Express, 22(13): 16571-84, DOI:10.1364/OE.22.016571

Mey, T., Schäfer, B. and Mann, K. (C08)
Measurement of the Wigner distribution function of non-separable laser beams employing a toroidal mirror
New Journal of Physics, 16: 123042, DOI:doi:10.1088/1367-2630/16/12/123042

Nöding, B., Herrmann, H. and Köster, S. (B07)
Direct Observation of Subunit Exchange Along Mature Vimentin Intermediate Filaments
Biophysical Journal: accepted for publication

Piazza, V., Weinhausen, B., Diaz, A., Dammann, C., Maurer, C., Reynolds, M., Burghammer, M. and Köster, S. (C10)
Revealing the Structure of Stereociliary Actin by X-Ray Nano-Imaging
ACS Nano, DOI:10.1021/nn5041526

Ruhlandt, A., Krenkel, M., Bartels, M. and Salditt, T. (C01)
Three-dimensional phase retrieval in propagation-based phase-contrast imaging
Phys. Rev. A, 89(3): 033847, DOI:10.1103/PhysRevA.89.033847

Schreck, S., Beye, M., Sellberg, J. a., McQueen, T., Laksmono, H., Kennedy, B., Eckert, S., Schlesinger, D., Nordlund, D., Ogasawara, H., Sierra, R. G., Segtnan, V. H., Kubicek, K., Schlotter, W. F., Dakovski, G. L., Moeller, S. P., Bergmann, U., Techert, S., Pettersson, L. G. M., Wernet, P., Bogan, M. J., Harada, Y., Nilsson, A. and Föhlisch, A. (B03)
Reabsorption of Soft X-Ray Emission at High X-Ray Free-Electron Laser Fluences
Phys. Rev. Lett., 113(15): 153002, DOI:10.1103/PhysRevLett.113.153002

Thekku Veedu, S., Raiser, D., Kia, R., Scholz, M. and Techert, S. (B10)
Ultrafast dynamical study of pyrene-N,N-dimethylaniline (PyDMA) as an organic molecular diode in solid state.
J. Phys. Chem. B, 118(12): 3291-7, DOI:10.1021/jp4121222

Thekku Veedu, S., Scholz, M., Kia, R., Paulmann, C. and Techert, S. (B10)
Acta Crystallogr. Sect. E. Struct. Rep. OnlineInternational Union of Crystallography,, 70(Pt 1): o16, DOI:10.1107/S1600536813032698

Walczak, M. (B04)
Bayesian structure reconstruction from single molecule X-ray scattering data
Georg-August University Göttingen,

Walczak, M. and Grubmüller, H. (B04)
Bayesian orientation estimate and structure information from sparse single-molecule x-ray diffraction images
Phys. Rev. E, 90(2): 022714, DOI:10.1103/PhysRevE.90.022714

Weinhausen, B., Saldanha, O., Wilke, R. N., Dammann, C., Priebe, M., Burghammer, M., Sprung, M. and Köster, S. (C10)
Scanning X-Ray Nanodiffraction on Living Eukaryotic Cells in Microfluidic Environments
Phys. Rev. Lett., 112(8): 088102, DOI:10.1103/PhysRevLett.112.088102

Wilke, R. N., Quéric, N., Hoppert, M., Heller, C., Schropp, A., Schroer, C., Burghammer, M., Salditt, T. and Reitner, J. (C10)
Scanning Hard X-ray Microscopy Imaging Modalities for Geobiological Samples
Geomicrobiology Journal, accepted for publication, DOI:10.1107/S0108767313019612

Wilke, R. N., Wallentin, J., Osterhoff, M., Pennicard, D., Zozulya, A., Sprung, M. and Salditt, T. (C10)
High-flux ptychographic imaging using the new 55 µm-pixel detector `Lambda' based on the Medipix3 readout chip
Acta Crystallogr. Sect. A Found. Adv.International Union of Crystallography,, 70(6): 552-562, DOI:10.1107/S2053273314014545

Yin, Z., Rajkovic, I., Kubicek, K., Quevedo, W., Pietzsch, A., Wernet, P., Föhlisch, A. and Techert, S. (B03,B10)
Probing the Hofmeister effect with ultrafast core-hole spectroscopy.
J. Phys. Chem. B, 118(31): 9398-403, DOI:10.1021/jp504577a


Bartels, M., Hernandez, V. H., Krenkel, M., Moser, T. and Salditt, T. (C01)
Phase contrast tomography of the mouse cochlea at microfocus x-ray sources
Appl. Phys. Lett., 103(8): 083703, DOI:10.1063/1.4818737

Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
Restricted Normal Cones and the Method of Alternating Projections: Theory
Set-Valued Var. Anal., 21(3): 431-473, DOI:10.1007/s11228-013-0239-2

Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
Restricted Normal Cones and the Method of Alternating Projections: Applications
Set-Valued Var. Anal., 21(3): 475-501, DOI:10.1007/s11228-013-0238-3

Boll, R., Anielski, D., Bostedt, C., Bozek, J., Christensen, L., Coffee, R., De, S., Decleva, P., Epp, S., Erk, B., Foucar, L., Krasniqi, F., Küpper, J., Rouzée, A., Rudek, B., Rudenko, A., Schorb, S., Stapelfeldt, H., Stener, M., Stern, S., Techert, S., Trippel, S., Vrakking, M., Ullrich, J. and Rolles, D. (B03)
Femtosecond photoelectron diffraction on laser-aligned molecules: Towards time-resolved imaging of molecular structure
Phys. Rev. A, 88(6): 061402, DOI:10.1103/PhysRevA.88.061402

Brennich, M. E. and Köster, S. (B07)
Tracking reactions in microflow
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Characterization of refractory organic substances by NEXAFS using a compact X-ray source
J. Soils Sedimentsopen access,, 12(1): 24-34, DOI:10.1007/s11368-011-0385-9

Thutupalli, S., Herminghaus, S. and Seemann, R. (B12)
Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 7(4): 1312, DOI:10.1039/c0sm00312c

Ullal, C. K., Primpke, S., Schmidt, R., Böhm, U., Egner, A., Vana, P. and Hell, S. W. (A01)
Flexible Microdomain Specific Staining of Block Copolymers for 3D Optical Nanoscopy
Macromolecules, 44(19): 7508-7510, DOI:10.1021/ma201504f


A. Debnarova, S. Techert, and S. Schmatz (B 3)
Ab initio studies of ultrafast x-ray scattering of the photodissociation of iodine

I. Rajkovic, J. Hallmann, S. Grübel, R. More, W. Quevedo, M. Petri, S. Techert (B 3)
Development of a mulipurpose vacuum chamber for serial optical and diffraction experiments with free electron laser radiation
Rev. Sci. Instr., 81, 045105-1-6, 2010

I. Rajkovic, G. busse, J. Hallmann, R. More, M. Petri, W. Quevedo, F. Krasniqi, A. Rudenko, T. Tschentscher, N. Stojanovic, S. Düsterer, R. Treusch, M. Tolkiehn, S. Techert (B 3)
Diffraction Properties of Periodic Lattices under Free Electron Laser Radiation
PRL 104, 125503 (2010)

C.v. Middendorf, A. Egner, C. Geisler, S.W. Hell, A. Schoenle (A 1)
Isotropic 3D nanoscopy base on single emitter switching
Opt. Express, 2, 1-400, 2010

M. Priebe, S. Kalbfleisch, M. Tolkiehn, S. Köster, B. Abel, R. J. Davies and T. Salditt (Project B2, B7, C1) (C 1)
Orientation of biomolecular assemblies in a microfluidic jet
New Journal of Physics 12 (2010)

O. Ivanyshyn, R. Kress, P. Serranho, (C 2)
Huygens principle and iterative methods in inverse obstacle scattering.
Advances in Computational Mathematics 33, 413-429 (2010)

A. Munk, M. Pricop (A 4)
On the self-regularization property of the EM algorithm for Poisson inverse problems
Festschrift in Honour of Ludwig Fahrmeir, 431-446, Springer Verlag, 2010

F. C. MacKintosh and C. F. Schmidt (A 3)
Active cellular materials
Cell Biology 2010, 22:29–35, 2010

S. Köster, Y.C. Lin, H. Herrmann, D. Weitz (B 7)
Nanomechanics of vimentin intermediate filament networks
Soft Matter, 6, 1910-1914, 2010

O. Ivanyshyn, R. Kress (C 2)
Identification of sound-soft 3D obstacles from phaseless data
Inverse Problems and Imaging 4, 111-130 (2010)

F. Barkusky, A. Bayer, S. Döring, P. Grossmann, K. Mann (C 2)
Damage threshold measurements on EUV optics using focused radiation from a table-top laser produed plasma source
OPTICS EXPRESS Vol. 18, No. 5, 4346-4355, 2010

W. Quevedo, C. Peth, G. Busse, K. Mann, and S. Techert (B 3)
Nanosecond Dynamics of Photoexcited Lyotropic Liquid Crystal Structures
J. Phys. Chem. B 2010, 114, 8593–8599, 2010

J. Thieme, J. Sedlmair, S.-C. Gleber, J. Prietzel, J. Coates, K. Eusterhues, G. Abbt-Braun and M. Salome (B 3)
X-ray spectromicroscopy in soil and environmental sciences
J. Synchrotron Rad. 17, 149–157, 2010

K. Giewekemeyer, P. Thibault, S. Kalbfleisch, A. Beerlink, C. M. Kewish, M. Dierolf, F. Pfeiffer, T. Salditt (C 1)
Quantitative biological imaging by ptychographic x-ray diffraction microscopy
Proc. Nat. Acad. Sci. U.S.A., 107, 529-534, 2010

K. Giewekemeyer, H. Neubauer, S. Kalbfleisch, S. P. Krüger, and T Salditt (C 1)
Holographic and diffractive x-ray imaging using waveguides as quasi-point sources
New Journal of Physics 12, 035008, 2010

S. P. Krüger, K. Giewekemeyer, S. Kalbfleisch, M. Bartels, H. Neubauer, and T. Salditt (Project C5) (C 1)
Sub-15 nm beam confinement by two crossed x-ray waveguides
Opt. Express, 18, 13492-13501, 2010

Y. Iwashita, S. Herminghaus, R. Seemann, and C. Bahr (C 1)
Smectic membranes in aqueous environment
PHYSICAL REVIEW E 81, 051709, 2010

S. Thutupalli, S. Herminghaus and R. Seemann (C 1)
Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 6, Advance Article, 2010, DOI: 10.1039

J. Röder, T. Liese, and H.-U. Krebs (C 4)
Material-dependent smoothing of periodic rippled structures by pulsed laser deposition

T. Liese, V. Radisch, H.-U. Krebs (C 4)
Fabrication of multilayer Laue lenses by a combination of pulsed laser deposition and focused ion beam
Rev. Sci. Instrum. 81 (2010) 073710

J. Hallmann, W. Quevedo, G. Grübel, I. Rajkovic, G. Busse, R. More, M. Petri, F. Krasniqi, A. Rudenko, S. Techert (B 3)
First steps towards probing chemical reaction dynamics with free electron laser radiation
J. Phys. B: At. Mol. Opt. Phys. (Special Issue Five Years of FLASH), 43, 194009-194016

J. Thieme, S.-C. Gleber, J. Sedlmair, J. Rieger, J. Niemeyer, J. Coates (B 3)
X-Ray Spectromicroscopy Studies of Nanoparticels in Aqueous Media
F. Frimmel, R. Niessner, eds., Nanoparticles in the Water Cycle:Properties, Analysis and Environmental Relevance", Springer-Verlag Heidelberg, 2010

J. Thieme, S.C. Gleber, J. Sedlmair, J. Rieger, J. Niemeyer, J. Coates (B 3)
X-Ray Spectromicroscopy Studies of Nanoparticles in Aqueous Media
DOI 10.1007/978-3-642-10318-6_7

A. Bayer, F. Barkusy, S. Döring, P. Großmann, K. Mann (C 4)
Applications of Compact Laser-Driven EUV/XUV Plasma Sources
X-Ray Optics and Instrumentation DOI 10.1155/2010/687496

F. Ben Hassen, O. Ivanyshyn, M. Sini (C 2)
The 3D acoustic scattering by complex obstacles. The accuracy issue.
Inverse Problems, 26, 105008, 2010


F. Barkusky, A. Bayer, C. Peth, and K. Mann ()
Direct photoetching of polymers using radiation of high energy density from a table-top extreme ultraviolet plasma source

M. Osterhoff and T. Salditt ()
Real structure effects in X-ray waveguide optics: The influence of interfacial roughness and refractive index profile on the near-field and far-field distribution
Optics Communication 282, 3250-256, 2009

R. Schmidt, C. A. Wurm, A. Punge, A. Egner, S. Jakobs, and S. W. Hell (A 1)
Mitochondrial Cristae Revealed with Focused Light
NANO LETTERS 2009, Vol.9, No. 6, 2508-2510

C. K. Ullal, R. Schmidt, S. W. Hell, and A. Egner (A 1)
Block Copolymer Nanostructures Mapped by Far-Field Optics
NANO LETTERS 2009, Vol. 9, No.6 2497-2500

N. Nijenhuis, D. Mizuno, J. & A. E. Spaan and C. F. Schmidt (A 3)
Viscoelastic response of a model endothelial glycocalyx
Physical Biology 292559, 14/01/2009

D. Mizuno, R. Bacabc, C. Tardin, D. Head and C. F. Schmidt (A 3)
High-resolution probing of cellular force transmission
Physical Review Letters PRL 102, 168102 (2009)

H. M. Evans, E. Surenjav, C. Priest, S. Herminghaus, R. Seemann and T. Pfohl (Project B1, C3) (A 3)
In situ formation, manipulation, and imaging of droplet-encapsulated fibrin networks
The Royal Society of Chemistry, Lab Chip, 2009, 9, 1933-1941

B. Enders, K. Giewekemeyer, T. Kurz, S. Podorov and T. Salditt (C 1)
Non-iterative coherent diffractive imaging using a phase-shifting reference frame
New Journal of Physics 11 (2009) 043021

T. Salditt, K. Giewekemeyer, C. Fuhse, S.P. Krüger, R. Tucoulou and P. Cloetens (C 1)
Projection phase contrast microscopy with a hard x-ray nanofucused beam: Defocus and contrast transfer
Physical Review B 79, 1 (2009)

J. Haas, E. Vöhringer-Martinez, A. Bögehold, D. Matthes, U. Hensen, A. Pelah, B. Abel, and H. Grubmüller (C 1)
Primary Steps of pH-Dependent Insulin Aggregation Kinetics are Governed by Conformational Flexibility
ChemBioChem 2009, 10, 1816 – 1822

S. W. Hell, R. Schmidt and A. Egner (A 1)
Diffraction-unlimited three-dimensional optical nanoscopy with opposing lenses

F. Barkusky, C. Peth, A. Bayer, K. Mann, J. John and P. E. Malinowski (A 1)
Radiation damage resistance of AlGaN detectors for applications in the extreme-ultraviolet spectral range
Review of Scientific Instruments, 80, 093102 (2009)

M. Petri, G. Busse, W. Quevedo, S. Techert (B 3)
Photo-Induced Phase Transitions to Liquid Crystal Phases: Influence of the Chain Length from C8E4 to C14E4
Materials 2009, 2 1305-1322; doi:10.3390/ma2031305

J. Hallmann, W. Morgenroth, C. Paulmann, J. Davaasambuu, Q.-Y. Kong, M. Wulff, S. Techert (B 3)
Time-resolved x-ray diffraction of the photochromic α-styrylpyrylium trifluoromethanesulfonate crystal films reveals ultrafast structural switching
J. Am. Chem. Soc.2009, 131, 15018-15025 (2009)

W. Quevedo, C. Peth, G. Busse, M. Scholz, K. Mann, S. Techert (Project C4) (B 3)
Time-resolved soft x-ray diffraction reveals transient structural distortions of ternary liquid crystals
Int. J. Mol. Sci. 2009, 10 4754-4771

J. Sedlmair, S.-C. Gleber, C. Peth, K. Mann and J. Thieme (Project C4) (B 3)
NEXAFS spectroscopy with a laser plasma x-ray source on soil samples
J Phys Conf Ser, 186 (2009)

J. Thieme, J. Sedlmair, S.-C. Gleber, M. Bertilson, O. v. Hofsten, P. Takman and H. M. Hertz (B 3)
High-resolution imaging of soil colloids in aqueous media with a compact soft X-ray microscope
J Phys Conf Ser, 186 (2009)

S. C. Gleber, J. Sedlmair, M. Bertilson, O. v. Hofsten, S. Heim, P. Guttmann, H. M. Hertz, P. Fischer and J. Thieme (B 3)
X-ray stereo microscopy for investigation of dynamics in soils
J Phys Conf Ser, 186 (2009)

E. Bosman, J. Thieme (B 3)
Modeling of XANES-Spectra with the FEFF-Program
J Phys Conf Ser, 186 (2009)

K. Giewekemeyer, M. Hantke, C. Beta, Tucoulou, T. Salditt (C 1)
Fluorescence imaging of dictyostelium discoideum with a hard X-ray nanoprobe
Journal of Physics: Conference Series, Vol. 186, 012086 (2009)

A. Beerlink, M. Mell, M. Tolkiehn, T. Salditt (C 1)
Hard x-ray phase contrast imaging of black lipid membranes
Applied Physics Letters 95, 203703 (2009)

E. M. Puchner, A. Alexandrovich, A. L. Kho, U. Hensen, L. V.Schäfer, B. Brandmeier, F. Gräter, H. Grubmüller, H. E. Gaub, M. Gautel (B 4)
Michanoenzymatics of titin kinase
PNAS no. 36 (2009) 13385-13390

B. Fuchs, F. Schlenkrich, S. Seyffahrth, A. Meschede, R. Rotzoll, P. Vana, P. Großmann, K. Mann, H.-U. Krebs (C 4)
Hardening of smooth pulsed laser deposited PMMA films by heating
Applied Physics A (2009) DOI 10.1007/s00339-009-5525-3

N. Bissantz, G. Claeskens, H. Holzmann, A. Munk (A 4)
Testing for lack of t in inverse regression with applications to biophotonic imaging
J. Royal Statist. Soc. B, 71, 25-48, 2009

C. Peth, F. Barkusky, J. Sedlmair, S.-C. Gleber, E. Novakova, J. Niemeyer, J. Thieme, T. Salditt, K. Mann (A 4)
Near-Edge X-Ray Absorption Fine Structure Measurements Using a Laser Plasma XUV Source
J. Phys. Conf. Ser., 186, 0120032, 2009

F. Bauer, T. Hohage, A. Munk (C 2)
Iteratively Regularized Gauss-Newton Methods for Nonlinear Inverse Problems with Random Noise
SIAM J. Numer. Anal., 47, 1827-1846, 2009

F. Barkusky,A. Bayer, C.Peth, K. Mann (C 2)
Direct photoetching of polymers using radiation of high energy density from a table-top extreme ultraviolet plasma source

T. Hohage, L. Nannen (C 2)
Hardy Space innite elements for scattering and resonance problems
SIAM J. Numer. Anal., 47, 972-996, 2009

E. Rapp, A. Charvat, A. Beinsen, U. Plessmann, U. Reichl, A. Seidel-Morgenstern, H. Urlaub, B. Abel (C 2)
Atmospheric Pressure Free Liquid Infrared MALDI Mass Spectrometry: Toward a combined ESI/MALDILiquid Chromatography Interface
Anal. Chem., 81, 443-452, 2009

O. Link, E. Vöhringer-Martinez, E. Lugovoj, Y. Liu, K. Siefermann, M. Faubel, H. Grubmüller, R. B. Gerber, Y. Miller, B. Abel (C 2)
Ultrafast phase transitions in metastable water near liquid interfaces
Faraday Disc., 141, 67-79, 2009


C. Peth, F. Barkusky and K. Mann (C 4)
Near-edge x-ray absorption fine structure measurements using a laboratory-scale XUV source
J. Phys. D: Appl. Phys. 41 105202, 2008

M. Scheel, R. Seemann, M. Brinkmann, M. DI Michiel, A. Sheppard, B. Breidenbach AND S. Herminghaus (C 4)
Morphological clues to wet granular pile stability
Nature materials, Published online: 10 February 2008

S. Pankin, A. K. Hartmann and T Salditt (C 4)
X-Ray Propagation in Tapered Waveguides: Simulation and Optimization
Optics Communication 281 (2008) 2779–2783

A. Kohlstedt, S. Kalbfleisch, T. Salditt, M. Reiche, U. Gösele, E. Lima, P. Willmott (C 4)
Two-dimensional X-ray waveguides: fabrication by wafer-bonding process and characterization
Appplied Physics A 91, 7-12(2008)

G. Groenhof, L. V. Schäfer, M. Boggio-Paqua, H. Grubmüller, and M. A. Robb (B 4)
Arginine52 controls the photoisomerization process in Photoactive Yellow Protein
J. Am. Chem. Soc., 130, 3250-3251, 2008

R. Schmidt, C. A. Wurm, S. Jakobs, J. Engelhardt, A. Egner & S. W. Hell (A 1)
Spherical nanosized focal spot unravels the interior of cells

T. Salditt, S.P. Krüger, C. Fuhse, and C. Bähtz (C 1)
High-Transmission Planar X-Ray Waveguides
Physical Review Letters 100, 148401 (2008)(Project C5)

E. Nováková, G. Mitrea, C. Peth, J. Thieme, K. Mann and T. Salditt (Project B5, C1, C4) (C 1)
Solid supported multicomponent lipid membranes studied by x-ray spectromicroscopy
Biointerphases 3(2) June 2008

W. Quevedo, M. Petri and S. Techert (B 3)
Home-based time-resolved photo small angle X-ray diffraction and its applications

C. Peth (C 1)
XUV-Laserplasmaquellen für die Absorptions-Spektroskopie und zeitaufgelöste Röntgenbeugung (Dissertation zur Erlangung des Doktorgrades)
SV Sierke Verlag, 2008

N.-A. Lakomek, K. F. A. Walter, C. Farès, O. F. Lange, B. L. de Groot, H. Grubmüller, R. Brüschweiler, A. Munk, S. Becker, J. Meiler, C. Griesinger, (A 4)
Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.
Journal of Biomolecular NMR, 41, 139-155, 2008

R. Walder, C. F. Schmidt, and M. Dennin (A 3)
Combined marco- and microrheometer for use with Langmuir monolayers
Review of scientific instruments, 79, 063905, 2008

M. Atakhorrami, D. Mizuno, G. H. Koenderink, T. B. Liverpool, F. C. MacKintosh, C. F. Schmidt (A 3)
Short-time inertial response of viscoelastic fluids measured with Brownian motion and with active probes
Physical Review E, 77, 061508-13, 2008

N. Nijenhuis, D. Mizuno, C. F. Schmidt, H. Vink, J. A. E. Spaan (A 3)
Microrheology of Hyaluronan Solutions: Implications for the Endothelial Glycocalyx
Biomacromolecules, Vol. 9, No. 9, 2008

D. Mizuno, D. A. Head, F. C. MacKintosh, C. F. Schmidt (A 3)
Active and Passive Microrheology in Equilibrium and Nonequilibrium Systems
Macromolecules, 41, 7194-7202, 2008

G. Lotze (A 3)
Röntgenanalyse der Amyloid-Aggregation am Modellprotein Insulin

W. Quevedo, M. Petri, G. Busse, S. Techert (B 3)
On the mechanism of photoinduced phase transitions in ternary liquid crystal systems near thermal equilibrium.
Journal of Chemical Physics, 129, 024502, 2008

A. Beerlink, P.-J. Wilbrandt, E. Ziegler, D. Carbone, T.H. Metzger, and T. Salditt (C 1)
X-ray Structure Analysis of Free-Standing Lipid Membranes Facilitated by Micromachined Apertures
Langmuir 24 (9), 4952-4958, 2008

T. Hohage, K. Giewekemeyer, T. Salditt (C 1)
Iterative reconstrucition of a refractive-index profile from x-ray or neutron reflectivity measurements
Physical Review E, 77, 051604, 2008

S. Jabbari-Farouji, D. Mizuno, D. Derks, G. H. Wegdam, F. C. MacKintosh3, C. F. Schmidt3,5 and D. Bonn (A 3)
Effective temperatures from the fluctuation-dissipation measurements in soft glassy materials
EPL, 84 (2008) 20006, doi: 10.1209/0295-5075/84/20006

Y. Iwashita, C. Bahr, C. Priest, S. Herminghaus, R. Seemann (A 3)
Dynamic x-ray optics with microfluidics: stablization of gas bubbles by surface ordering and freezing
Proceedings of the 1st European Conference on Microfluidics - Microfluidics 2008 - Bolgona, December 10-12, 2008

N. Bissantz, B. A. Mair and A. Munk (A 4)
A statistical stopping rule for MLEM reconstructions in PET
IEEE Nucl. Sci. Symp. Conf. Rec., 8, 4198-4200, 2008

A. Bögehold (A 3)
Kinetische Studien zur Bildung von Insulinfibrillen mittels Flüssigstrahldesorptions-Massenspektrometrie (Dissertation zur Erlangung des Doktorgrades


A. Egner, C. Geisler, C. von Middendor, H. Bock, D. Wenzel, R. Medda, M. Andresen, A. Stiel, S. Jakobs, C. Eggeling, A. Schoenle, S. W. Hell (A 1)
Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters
Biophys. J., 93, 3285 - 3290, 2007

O. Ivanyshyn (C 2)
Shape reconstruction of acoustic obstacles from the modulus of the far eld pattern
Inverse Probl. Imaging, 1, 609-622, 2007

C. Peth, A. Kalinin, F. Barkusky, K. Mann, J. P. Toennies, L. Y. Rusin (C 4)
XUV laser- plasma source based on solid Ar lament
Rev. Sci. Instr., 78, 103509, 2007