Publications

2019

Frahm, L., Keller-Findeisen, J., Alt, P., Schnorrenberg, S., del Álamo Ruiz, M., Aspelmeier, T., Munk, A., Jakobs, S. and Hell, S. (A06, A07, B10)
Molecular contribution function in RESOLFT nanoscopy
Opt. Express, 27(15): 21956, DOI:org/10.1364/OE.27.021956

König, C., Munk, A. and Werner, F. (A04)
Multidimensional multiscale scanning in Exponential Families: Limit theory and statistical consequences
arXiv:1802.07995

Álamo, M., Li, H. and Munk, A. (A04)
Frame-constrained Total Variation Regularization for White Noise Regression
arXiv:1807.02038

Töpperwien, M., Markus, A., Alves, F. and Salditt, T. (C01)
Contrast enhancement for visualizing neuronal cytoarchitecture bypropagation-based x-ray phase-contrast tomography
NeuroImage, 199: 70-80, DOI:10.1016/j.neuroimage.2019.05.043

Ruhlandt, A. and Salditt, T. (C01)
Time-resolved x-ray phase-contrast tomography of sedimenting micro-spheres
New J. Phys., 21: 043017, DOI:10.1088/1367-2630/ab13c8

Rico, F., Russek, A., González, L., Grubmüller, H. and Scheuring, S. (A05)
Heterogeneous and rate-dependent streptavidin–biotin unbinding revealed by high-speed force spectroscopy and atomistic simulations
PNAS, 116(14): 6594-6601, DOI:10.1073/pnas.1816909116

Brennich, M., Vainio, U., Wedig, T., Bauch, S., H., H. and Köster, S. (B07)
Mutation-induced alterations of intra-filament subunit organization in vimentin filaments revealed by SAXS
Soft Matter, 15: 1999-2008, DOI:10.1039/c8sm02281j

del. Álamo, M. and Munk, A. (A04)
Total variation multiscale estimators for linear inverse problems
DOI:1905.08515

Toepperwien, M., Doeppner, T. R., Zechmeister, B., Bähr, M. and Salditt, T. (C01)
Multiscale x-ray phase-contrast tomography in a mouse model of transient focal cerebral ischemia
BIOMEDICAL OPTICS EXPRESS, 92: 338372, DOI:10.1364/BOE.10.000092

Holburg, J., Müller, M., Mann, K. and Wieneke, S. (C04)
Brilliance improvement of laser-produced extreme ultraviolet and soft x-ray plasmas based on pulsed gas jets
J. Vac. Sci. Technol. A, 37(3): 031303-1, DOI:10.1116/1.5089201

Geppert, J., Krahmer, F. and Stöger, D. (C11)
Sparse Power Factorization: Balancing peakiness and sample complexity
Advances in Computational Mathematics, 45(3) 1711–1728, 2019

Sprung, B. and Hohage, T. (C09)
Higher order convergence rates for Bregman iterated variational regularization of inverse problems Numer. Math., 4(1): 215-251,
DOI:10.1007/s00211-018-0987-x

Luke, R., Sabach, S. and Teboulle, M. ()
Optimization on Spheres: Models and Proximal Algorithms with Computational Performance Comparisons


2018

Beinert, R. and Plonka, G. (C11)
Enforcing uniqueness in one-dimensional phase retrieval by additional signal information in time domain
Applied and Computational Harmonic Analysis, 45: 505-525

Maretzke, S. (C02)
Locality estimates for Fresnel-wave-propagation and stability of x-ray phase contrast imaging with finite detectors
Inverse Problems, 34: 124004(38pp), DOI:10.1088/1361-6420/aae78f

Zickert, G. and Maretzke, S. (C02)
Cryogenic electron tomography reconstructions from phaseless data
Inverse Problems, 34: 124001, DOI:10.1088/1361-6420/aade22

Kamper, M., Ta, H., Jensen, N. A., Hell, S. W. and Jakobs, S. (B10)
Near-infrared STED nanoscopy with an engineered bacterial phytochrome
NATURE COMMUNICATIONS, 9(4762): 1-7, DOI:10.1038/s41467-018-07246-2

Lopez, C. G., Saldanha, O., Aufderhorst-Roberts, A., Martinez-Torres, C., Kuijs, M., Koenderink, G. H., Köster*, S., and Huber*, K. (*corresponding authors) (B07)
Effect of ionic strength on the structure and elongational kinetics of vimentin filaments
Soft Matter, DOI:10.1039/C8SM01007B

Werner, F. (A07)
Adaptivity and Oracle Inequalities in Linear Statistical Inverse Problems: a (numerical) survey. In: New Trends in Parameter Identification for Mathematical Models
Zubelli, B. H. L. P.Springer,: 291-316, DOI:10.1007/978-3-319-70824-9_15

Sivis, M., Pazos-Perez, N., Yu, R., Alvarez-Puebla, R., García de Abajo, F. J. and Ropers, C. (C08)
Continuous-wave multiphoton photoemission from plasmonic nanostars
Communications Physics, 1(13), DOI:10.1038/s42005-018-0014-7

Wittmeier, A., Cassini, C., Hemonnot, C., Weinhausen, B., Bernhardt, M., Salditt, T. and Köster, S. (C10)
Scanning Small-Angle-X-Ray Scattering for Imaging Biological Cells
Microsc. Microanal., 24 (Suppl 2): 332-334, DOI:10.1017/S1431927618013983

Li, H. and Werner, F. (A07)
Empirical Risk Minimization as Parameter Choice Rule for General Linear Regularization Methods
arXiv:1703.07809

Luke, R. D., Thao, N. H. and Tam, M. K. (C02)
Quantitative Convergence of Iterated Set-Valued Mappings
Mathematics of Operations Research, Articles in Advance: 1-34, DOI:10.1287/moor.2017.0898

Hagemann, J., Töpperwien, M. and Salditt, T. (C01)
Phase retrieval for near-field X-ray imaging beyond linearisation or compact support
Appl. Phys. Lett., 113: 041109, DOI:10.1063/1.5029927

Luke, R. D. and Malitsky, Y. (A04)
Block-coordinate primal-dual method for the nonsmooth minimization over linear constraints
arXiv:1801.04782

Brauße, F., Goldsztejn, G., Amini, K., Boll, R., Bari, S., Bomme, C., Brouard, M., Burt, M., Cunha de Miranda, B., Duesterer, S., Erk, B., Geleoc, M., Geneaux, R., Gentleman, A. S., Guillemin, R., Ismail, I., Johnsson, P., Journel, L., Kierspel, T., Koeckert, H., Kuepper, J., Lablanquie, P., Lahl, J., Lee, J. W. L., Mackenzie, S. R., Maclot, S., Manschwetus, B., Mereshchenko, A. S., Mullins, T., Olshin, P. K., Palaudoux, J., Patchkovskii, S., Penent, F., Piancastelli, M. N., Rompotis, D., Ruchon, T., Rudenko, A., Savelyev, E., Schirmel, N., Techert, S., Travnikova, O., Trippel, S., Underwood, J. G., Vallance, C., Wiese, J., Simon, M., Holland, D. M. P., Marchenko, T., Rouzee, A. and Rolles, D. (B03)
Time-resolved Inner-shell Photoelectron Spectroscopy: from a Bound Molecule to an Isolated Atom
Phys. Rev. A, 97(4): 043429, DOI:DOI: 10.1063/1.4998648

David, C., Rösner, B., Döring, F., Guzenko, V., Koch, F., Lebugle, M., Marschall, F., Seniutinas, G., Raabe, J., Watts, B., Grolimund, D., Yin, Z., Beye, M., Techert, S., Viefhaus, J., Falkenberg, G. and Schroer, C. (B03, B10)
Diffractive X-ray Optics for Synchrotrons and Free -Electron Lasers
Microsc. Microanal., 24: 264, DOI:10.1017/S1431927618013673

Paknikar, A. K., Eltzner, B. and Köster, S. (B08)
Direct characterization of cytoskeletal reorganization during blood platelet spreading
Progress in Biophysics and Molecular Biology, DOI:10.1016/j.pbiomolbio.2018.05.001

Bari, S., Egorov, D., Jansen, T. L. C., Boll, R., Hoekstra, R., Techert, S., Zamudio‐Bayer, V., Bülow, C., Lindblad, R., Leistner, G., Ławicki, A., Hirsch, K., Miedema, P. S., von Issendorff, B., Lau, J. T. and Schlathölter, T. (B03)
Soft X‐ray Spectroscopy as a Probe for Gas‐Phase Protein Structure: Electron Impact Ionization from Within
Chem. Europ. J., 24(30): 7631-7636, DOI:10.1002/chem.201801440

König, C., Munk, A. and Werner, F. (A04)
Multidimensional multiscale scanning in exponential families: Limit theory and statistical consequences
DOI:arXiv 1802.07995

Proksch, K., Werner F. and Munk, A. (A07)
Multiscale scanning in inverse problems
Ann. Statist., 46(6B): 3569-3602, DOI:org/10.1214/17-AOS1669

Schneider, L., Schmidt-Hieber, J., Staudt, T., Krajina, A., Aspelmeier T. and Munk, A. (A07)
Posterior consistency for in the binomial problem with both parameters unknown - with applications to quantitative nanoscopy
arXiv:1809.02443

Eltzner, B. and Huckemann, S. F. (B08)
A Smeary Central Limit Theorem for Manifolds with Application to High Dimensional Spheres
arXiv 1801.06581.: Submitted

Döring, F., Marschall, F., Yin, Z., Rösner, B., Beye, M., Miedema, P., Kubiček, K., Glaser, L., Raiser, D., Soltau, J., Guzenko, V., Viefhaus, J., Buck, J., Risch, M., Techert, S. and David, C. (B03, B10)
1D-Full Field Microscopy of Elastic and Inelastic Scattering with Transmission off-axis Fresnel Zone Plates
Proc. Int. X-Ray Microscop. Conf., 24: 184-185, DOI:10.1017/S1431927618013260

Erk, B., Müller, J. P., Bomme, C., Boll, R., Brenner, G., Chapman, H. N., Correa, J., Düsterer, S., Dziarzhytski, S., Eisebitt, S., Graafsma, H., Grunewald, S., Gumprecht, L., Hartmann, R., Hauser, G., Keitel, B., Korff Schmising, C., von Kuhlmann, M., Manschwetus, B., Mercadier, L., Müller, E., Passow, C., Plönjes, E., Ramm, D., Rompotis, D., Rudenko, A., Rupp, D., Sauppe, M., Siewert, F., Schlosser, D., Stüder, L., Swiderski, A., Techert, S., Tiedtke, K., Tilp, T., Treusch, R., Schlichting, I., Ullrich, J., Moshammer, R., Möller, T. and Rolles, D. (B03)
CAMP@FLASH: an End-station for Imaging, Electron- and Ion-Spectroscopy and Pump–Probe Experiments at the FLASH Free-Electron Laser
J. Synchr. Rad., 25(25), DOI:10.1107/S1600577518008585

Egorov, D., Bari, S., Boll, R., Dörner, S., Deinert, S., Hoekstra, R., Techert, S., Zamudio‐Bayer, V., Lindblad, R., Bülow, C., Timm, M., von Issendorff, B., Lau, J. T. and Schlathölter, T. (B03)
Near-edge Soft X-ray Absorption Mass Spectrometry of Protonated Melittin
J. Am. Soc. Mass Spectrom., DOI:10.1007/s13361-018-2035-6

Bari, S., Egorov, D., Jansen, T. L. C., Boll, R., Hoekstra, R., Techert, S., Zamudio‐Bayer, V., Bülow, C., Lindblad, R., Leistner, G., Ławicki, A., Hirsch, K., Miedema, P. S., von Issendorff, B., Lau, J. T. and Schlathölter, T. (B03, B10)
Soft X‐ray Spectroscopy as a Probe for Gas‐Phase Protein Structure: Electron Impact Ionization from Within
Chem. Europ. J., 24(30), DOI:10.1002/chem.201801440

Jay, R. M., Norell, J., Eckert, S., Hantschmann, M., Beye, M., Kennedy, B., Quevedo, W., Schlotter, W. F., Dakovski, G. L., Minitti, M. P., Hoffmann, M. C., Mitra, A., Moeller, S. P., Nordlund, D., Zhang, W., Liang, W. W., Kunnus, K., Kubiček, K., Techert, S. A., Lundberg, M., Wernet, P., Gaffney, K. and Odelius M. a nd Föhlisch, A. (B03)
Disentangling Transient Charge Density and Metal–Ligand Covalency in Photoexcited Ferricyanide with Femtosecond Resonant Inelastic Soft X-ray Scattering
J. Chem. Phys. Lett., 9(12): 3538

Mueller, A., Borovik, Bari, S., Buhr, T., Hoelste, K., Martins, M., Perry-Sassmannshausen, A., Phaneuf, R., Reinwardt, S., Ritz, S., Schubert, K. and Schippers, S. (B03)
Near-K-Edge Double and Triple Detachment of the F−Negative Ion: Observation of Direct Two-Electron Ejection by a Single Photon
Phys. Rev. Lett., 120(13): 133202, DOI:10.1103/PhysRevLett.120.133202

Ardenne, B., Mechelke, M. and Grubmüller, H. (B04)
Structure determination from single molecule X-ray scattering with three photons per image
Nature comm., 9: 2375, DOI:10.1038/s41467-018-04830-4

Block, J., Witt, H., Candelli, A., Cabanas Danes, J., Peterman, E. J. G., Wuite, G. J. L., Janshoff, A. and Köster, S. (B07)
Viscoelastic properties of vimentin originate from nonequilibrium conformational changes
Science Advances, 4(5): eaat1161, DOI:10.1126/sciadv.aat1161

Töpperwien, M., van der Meer, F., Stadelmann, C. and Salditt, T. (C01)
Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography
PNAS, DOI:10.1073/pnas.1801678115

Heidemann, K. M., Sageman-Furnas, A. O., Sharma, A., Rehfeldt, F., Schmidt, C. F. and Wardetzky, M. (A03)
Topology determines force distributions in one-dimensional random spring networks
Phys. Rev. E, 97: 022306

Heidemann, K., Sageman-Furnas, A. O., Sharma, A., Rehfeldt, F., Schmidt, C. and Wardetzky, M. (A03)
Topology counts: force distributions in circular spring networks
Phys. Rev. Lett., 120: 068001, DOI:10.1103/PhysRevLett.120.068001

Chizhik, A. M., Wollnik, C., Ruhlandt, D., Karedla, N., Chizhik, A. I., Hauke, L., Hähnel, D., Gregor, I., Enderlein, J. and Rehfeldt, F. (B08)
Dual-color metal-induced and Förster resonance energy transfer for cell nanoscopy
Molecular biology of the cell, 29(7): 846-851, DOI:org/10.1091/mbc.E17-05-0314

Hagemann, J. and Salditt, T. (C01)
Coherence-resolution relationship in holographic and coherent diffractive imaging
Opt. Express, 26: 242-253

van Leeuwen, T. and Maretzke, S. and J. Batenburg (C02)
Automatic alignment for three-dimensional tomographic reconstruction
Inverse Problems, 34(2)

Denz, M., Brehm, G., Hémonnot, C. Y. J., Spears, H., Wittmeier, A., Cassini, C., Saldanha, O., Perego, E., Diaz, A., Burghammer, M. and Köster, S. (B07)
Cyclic olefin copolymer as an X-ray compatible material for microfluidic devices
Lab on a Chip, 18: 171 - 178, DOI:10.1039/c7lc00824d

Amini, K., Savelyev, E., Brauße, F., Berrah, N., Bomme, C., Brouard, M., Burt, M., Christensen, L., Duesterer, S., Erk, B., Hoeppner, H., Kierspel, T., Krecinic, F., Lauer, A., Lee, J. W. L., Mueller, M., Mueller, E., Mullins, T., Redlin, H., Schirmel, N., Thogersen, J., Techert, S., Toleikis, S., Treusch, R., Trippel, S., Ulmer, A., Vallance, C., Wiese, J., Johnsson, P., Kuepper, J., Rudenko, A., Rouzzee, A., Stapelfeldt, H., Rolles, D. and R., B. (B03)
Photodissociation of aligned CH3I and C6H3F2I molecules probed with time-resolved Coulomb explosion imaging by site-selective extreme ultraviolet ionization
Struct Dyn., 5(1): 014301, DOI:10.1063/1.4998648


2017

Beinert, R. (C11)
One-dimensional phase retrieval with additional interference measurements
Results Math.: 72(1-2)

Beinert, R. (C11)
Ambiguities in one-dimensional phase retrieval from magnitudes of a linear canonical transform
ZAMM - Z. Angew. Math. Mech., 97(9): 1078–1082

Beinert, R. (C11)
Non-negativity constraints in the one-dimensional dicrete-time phase retrieval problem
Information and Inference: A Journal of the IMA,, 6: 213-224

Beinert, R. and Plonka, G. (C11)
Sparse Phase Retrieval of One-Dimensional Signals by Prony's Method
Front. Appl. Math. Stat.: 3:5, DOI:10.3389/fams.2017.00005

Lohse, L. M., Vassholz, M. and Salditt, T. (C01)
Tomography with extended sources: Theory, error estimates, and a reconstruction algorithm
PHYSICAL REVIEW A, 96: 063804, DOI:10.1103/PhysRevA.96.063804

Beinert, R. and Plonka, G. (C11)
Sparse phase retrieval of structured signals by Prony’s method
PAMM · Proc. Appl. Math. Mech., 17: 829 – 830, DOI:10.1002/pamm.201710382

Dunker, F., Eckle, K., Proksch, K. and Schmidt-Hieber, J. (A07)
Tests for qualitative features in the random coefficients model
DOI: arXiv:1704.01066

Yin, Z., Inhester, L., Thekku Veedu, S., Quevedo, W., Pietzsch, A., Wernet, P., Groenhof, G., Föhlisch, A., Grubmüller, H. and Techert, S. (B03, B04, B10)
Cationic and Anionic Impact on the Electronic Structure of Liquid Water
J. Phys. Chem. Lett., 8: 3759−3764, DOI:10.1021/acs.jpclett.7b01392

Kubiček, K., Thekku Veedu, S., Storozhuk, D., Kia, R. and Techert, S. (B03)
Geometric and electronic properties in a series of phosphorescent heteroleptic Cu(I) complexes: Crystallographic and computational studies
Polyhedron, 124: 166-176, DOI:10.1016/j.poly.2016.12.035

Savelyev, E., Boll, R., Bomme, C., Schirmel, N., Redlin, H., Erk, B., Düsterer, S., Mueller, E., Höppner, H., Toleikis, S., Müller, J., Kristin Czwalinna, M., Treusch, R., Kierspel, T., Mullins, T., Trippel, S., Wiese, J., Küpper, J., Brauβe, F., Krecinic, F., Rouzée, A., Rudawski, P., Johnsson, P., Amini, K., Lauer, A., Burt, M., Brouard, M., Christensen, L., Thøgersen, J., Stapelfeldt, H., Berrah, N., Müller, M., Ulmer, A., Techert, S., Rudenko, A. and Rolles, D. (B03)
Jitter-correction for IR/UV-XUV pump-probe experiments at the FLASH free-electron laser
New J. Phys., 19: 043009, DOI:134.76.41.182 on 21/08/2018

Amini, K., Boll, R., Lauer, A., Burt, M., Lee, J. W. L., Christensen, L., Brauβe, F., Mullins, T., Savelyev, E., Ablikim, U., Berrah, N., Bomme, C., Düsterer, S., Erk, B., Höppner, H., Johnsson, P., Kierspel, T., Krecinic, F., Küpper, J., Müller, M., Müller, E., Redlin, H., Rouzée, A., Schirmel, N., Thøgersen, J., Techert, S., Toleikis, S., Treusch, R., Trippel, S., Ulmer, A., Wiese, J., Vallance, C., Rudenko, A., Stapelfeldt, H., Brouard, M. and Rolles, D. (B03)
Alignment, Orientation, and Coulomb Explosion of Difluoroiodobenzene Studied with the Pixel Imaging Mass Spectrometry (PImMS) Camera
DOI:10.1063/1.4982220

Yin, Z., Rehanek, J., Löchel, H., Braig, C., Buck, J., Firsov, A., Viefhaus, J., Erko, A. and Techert, S. (B03)
Highly efficient soft X-ray spectrometer based on a reflection zone plate for resonant inelastic X-ray scattering measurements
Optics express, 25(10): 10984 - 10996, DOI:10.1364/OE.25.010984

Burt, M., Boll, R., Lee, J. W. L., Amini, K., Köckert, H., Vallance, C., Gentleman, A. S., Mackenzie, S. R., Bari, S., Bomme, C., Düsterer, S., Erk, B., Manschwetus, B., Mueller, E., Rompotis, D., Savelyev, E., Schirmel, N., Techert, S., Treusch, R., Küpper, J., Trippel, S., Wiese, J., Stapelfeldt, H., de Miranda, B. C., Guillemin, R., Ismail, I., Journel, L., Marchenko, T., Palaudoux, J., Penent, F., Piancastelli, M. N., Simon, M., Travnikova, O., Brausse, F., Goldsztejn, G., Rouzée, A., Géléoc, M., Geneaux, R., Ruchon, T., Underwood, J., Holland, D. M. P., Mereshchenko, A. S., Olshin, P. K., Johnsson, P., Maclot, S., Lahl, J., Rudenko, A., Ziaee, F., Brouard, M. and Rolles, D. (B03)
Coulomb-explosion imaging of concurrent CH2BrI photodissociation dynamics
PHYSICAL REVIEW A, 96: 043415, DOI:10.1103/PhysRevA.96.043415

Raiser, D., Mildner, S., Ifland, B., Mohsen, S., Blöchl, P., Techert, S. and Jooss, C. (B03)
Evolution of Hot Polaron States with a Nanosecond Lifetime in a Manganite Perovskite
Advanced science news, 7(12): 1602174, DOI:10.1002/aenm.201602174

Marschall, F., Yin, Z., Rehanek, J., M., B., Döring, F., Kubicek, K., Raiser, D., ST., V., Buck, J., Rothkirch, A., VA., G., Viefhaus, J., David, C. and Techert, S. (B03)
Transmission zone plates as analyzers for efficient parallel 2D RIXS-mapping
Sci Rep., 7(1): 8849, DOI:10.1038/s41598-017-09052-0.

Kjær, K. S., Zhang, W., Alonso-Mori, R., Bergmann, U., Chollet, M., Hadt, R. G., Hartsock, R. W., Harlang, T., Kroll, T., Kubiček, K., Lemke, H. T., Liang, H. W., Liu, Y., Nielsen, M. M., Robinson, J. S., Solomon, E. I., Sokaras, D., van Driel, T. B., Weng, T.-C., Zhu, D., Persson, P., Wärnmark, K., Sundström, V. and Gaffney, K. J. (B03)
Ligand manipulation of charge transfer excited state relaxation and spin crossover in [Fe(2,2′-bipyridine)2(CN)2
Structural Dynamics, 4: 044030, DOI:10.1063/1.4985017

Maretzke, S. and Hohage, T. (C02)
Stability Estimates for Linearized Near-Field Phase Retrieval in X-ray Phase Contrast Imaging
SIAM J. APPL. MATH, 77(2): 384-408, DOI:10.1137/16M1068170

Rehfeldt, F. and Schmidt, C. (A03)
Physical probing of cells
J. Phys. D: Appl. Phys., 50: 463001, DOI:doi.org/10.1088/1361-6463/aa8aa6

Sivis, M., Taucer, M., Vampa, G., Jonston, K., Staudte, A., Yu. Naumov, A., Villeneuve, D. M., Ropers, C. and Corkum, P. B. (C08)
Tailored semiconductors for high-harmonic optoelectronics
Science, 357: 303-306, DOI:20.1126/science.aan2395

Tameling, C., Sommerfeld, M. and Munk, A. (A06)
Empirical optimal transport on countable metric spaces: Distributional limits and statistical applications

Hohage, T. and Frederic, W. (C09)
Characterizations of variational source conditions, converse results, and maxisets of spectral regularization methods
SIAM J. Numer. Anal., 2: 598-620, DOI:10.1137/16M1067445

Zhong, Y., Ostach, D., Scholz, M., Epp, S. W., Techert, S., Schlichting, I., Ullrich, J. and Krasniqi, F. (B03)
Hot carrier relaxation in CdTe via phonon-plasmon modes
J. Phys.: Condens. Matter, 29: 095701 (12pp), DOI:10.1088/1361-648X/aa5478

Yin, Z., Peters, H.-B., Hahn, U., Gonschior, J., Mierwaldt, D., Rajkovic, I., Viefhaus, J., Jooss, C. and Techert, S. (B03)
An endstation for resonant inelastic X-ray scattering studies of solid and liquid samples
JOURNAL OF SYNCHROTRON RADIATION, 24: 302-306,
DOI:10.1107/S1600577516016611

Huckemann, S. F. and Eltzner, B. (B08)
Backward Nested Descriptors Asymptotics with Inference on Stem Cell Differentiation
Ann. Statist., DOI:arXiv:1609.00814v1

Krenkel, M., Toepperwien, M., Alves, F. and Salditt, T. (C01)
Three-dimensional single-cell imaging with X-ray waveguides in the holographic regime
Journal of Applied Crystallography, 73: 282-292, DOI:10.1107/S2053273317007902

Lauster, F., Luke, D. R. and Tam, M. K. (A04, C02)
Symbolic Computation with Monotone Operators
Set Valued and Variational Analysis, DOI:10.1007/s11228-017-0418-7

Luke, D. R. and Shefi, R. (A04)
A Globally Linearly Convergent Method for Pointwise Quadratically Supportable Convex-Concave Saddle Point Problems
Math. Anal. and Appl., DOI:10.1016/j.jmaa.2017.02.068

Luke, D. R. (A04, C02)
Phase Retrieval, What`s New?
SIAG/OPT Views and News, 25(1)

Munk, A. (A04, A06, A07)
Using nanostatistics to determine the functions of cells at a molecular level
Research Features Magazine: 56-57

Prabhune, M., Rehfeldt, F. and Schmidt, C. (A03)
Molecular force sensors to measure stress in cells
Journal of Physics D: Applied Physics, 50(23): 233001

Block, J., Witt, H., Candelli, A., Peterman, E. J. G., Wuite, G. J. L., Janshoff, A. and Köster, S. (B07)
Nonlinear Loading-Rate-Dependent Force Response of Individual Vimentin Intermediate Filaments to Applied Strain
PHYSICAL REVIEW LETTERS, 118: 048101, DOI:org/10.1103/PhysRevLett.118.048101

Bernhardt, M., Nicolas, J.-D., Eckermann, M., Eltzner, B., Rehfeldt, F. and Salditt, T. (B08)
Anisotropic x-ray scattering and orientation fields in cardiac tissue cells
New J. Phys., 19: 013012, DOI:doi:10.1088/1367-2630/19/1/013012

Jahn, T., Wilke, R., Chushkin, Y. and Salditt, T. (C01)
How many photons are needed to reconstruct random objects in coherent X-ray diffractive imaging?
Acta Cryst., 73: 2053-2733, DOI:doi.org/10.1107/S20532733160

Töpperwien, M., Krenkel, M., Vincenz, D., Stöber, F., Oelschlegel, A. M., Goldschmidt J. and Salditt, T. (C01)
Three-dimensional mouse brain cytoarchitecture revealed by laboratory-based x-ray phase-contrast tomography
Sci. Rep., 7: 42847, DOI:10.1038/srep42847

Hagemann, J., Robisch, A.-L., Osterhoff M. and Salditt, T. (C01)
Probe reconstruction for holographic X-ray imaging
J. Synchrotron Rad., 24: 498-505, DOI:org/10.1107/S160057751700128

2016

Pein, A., Loock, S., Plonka, G. and Salditt, T. (C01, C11)
Using sparsity information for iterative phase retrieval in x-ray propagation imaging
Optics Express, 24(8): pp. 8332-8343, DOI:10.1364/OE.24.008332

Loock, S. and Plonka, G. (C11)
Iterative Phase Retrieval with Sparsity Constraints
PAMM, 16(1): 835-836, DOI:10.1002/pamm.201610406

Proksch, K., Werner F. and Munk, A. (A07)
Multiscale scanning in inverse problems

Müller, M., Mey, T., Niemeyer, J., Lorenz, M. and Mann, K. (C04)
Table-to Soft X-ray Microscopy with a Laser-induced Plasma Source Based on a Pulsed Gas-jet
AIP Conference Proceedings, 1764, DOI:10.1063/1.4961137

Kühl, F.-C., Müller, M., Schellhorn, M., Mann K., W. S. and Eusterhues, K. (C. (C04)
Near-edge x-ray absorption fine structure spectroscopy at atmospheric pressure with a table-top laser-induced soft x-ray source
Journal of Vacuum Science & Technology, A 34(4): 041302, DOI:10.1116/1.4950599

Yalunin, S., Schröder, B. and Ropers, C. (C08)
Theory of electron energy loss near plasmonic wires, nanorods, and cones
Rhysical Review B, 93: 115408, DOI:10.1103/PhysRevB.93.115408

Prabhune, M., v. Roden, K., Rehfeldt, F. and Schmidt, C. (A03)
Sulfo-SMCC prevents annealing of taxol-stabilized microtubules in vitro
PLOS ONE, DOI:10.1371/journal.pone.0161623

Töpperwien, M., Krenkel, M., Quade, F. and Salditt, T. (C01)
Laboratory-based x-ray phase-contrast tomography enables 3D virtual histology
Proc. SPIE 9964, Advances in Laboratory-based X-Ray Sources, Optics, and Applications V, 99640I, DOI:10.1117/12.2246460

Töpperwien, M., Krenkel, M., Müller, K. and Salditt, T. (C01)
Phase-contrast tomography of neuronal tissues: from laboratory- to high resolution synchrotron CT
Proc. SPIE 9967, Developments in X-Ray Tomography X, 99670T, DOI:10.1117/12.2238496

Lopez, C. G., Saldanha, O., Huber, K. and Köster, S. (B07)
Lateral association and elongation of vimentin intermediate filament proteins: A time-resolved light-scattering study
PNAS, 113(40): 11152 ? 11157, DOI:10.1073/pnas.1606372113

Kramer, S. C., Hagemann, J., Künneke, L. and Lebert, J. (C01)
Parallel Statistical Multiresolution Estimation for Image Reconstruction
SIAM Journal on Scientific Computing, 38(5): C533-C559, DOI:10.1137/15M1020332

Saldanha, O., Brennich, M. E., Burghammer, M., Herrmann, H. and Köster, S. (B07)
The filament forming reactions of vimentin tetramers studied in a serial-inlet microflow device by small angle x-ray scattering
AIP Biomicrofluidics, 10: 024108, DOI:10.1063/1.4943916

Prabhune, M., von Roden, K., Rehfeldt, F. and Schmidt, C. F. (A03)
Sulfo-SMCC Prevents Annealing of Taxol-Stabilized Microtubules In Vitro
PLoS ONE, 11, DOI:10.1371/journal.pone.0161623

Kunnus, K., Josefsson, I., Rajkovic, I., Quevedo, W., Beye, M., Weniger, C. and Grübel, S. (B03, B10)
Identification of the dominant photochemical pathways and mechanistic insights to the ultrafast ligand exchange of Fe(CO)5 to Fe(CO)4EtOH
STRUCTURAL DYNAMICS, 3(3): 043204, DOI:10.1063/1.4941602

Aspelmeier, T., Charitha, C. and Luke, D. (A04)
Local Linear Convergence of the ADMM/Douglas--Rachford Algorithms without Strong Convexity and Application to Statistical Imaging
SIAM J. Imaging Sciences

Charitha, C., Dutta, J. and Luke, R.D. (A04, C02)
Lagrange multipliers, (exact) regularization and error bounds for monotone variational inequalities
Lagrange multipliers, (exact) regularization and error bounds for monotone variational inequalities, DOI:10.1007/s10107-016-1022-6

Walczak, M. and Grubmüller, H. (B04)
BASDet:Bayesian approach(es) for structure determination from single molecule X-ray diffraction images
Computer Physics Communications, 201: 159-166

HUCKEMANN, S., KIM, K.-R., MUNK, A., REHFELDT, F., SOMMERFELD, M., WEICKERT, J. and WOLLNIK, C. (B08, A04, A06)
The circular SiZer, inferred persistence of shape parameters and application to early stem cell differentiation
Bernoulli, 22(4): 2113?2142, DOI:10.3150/15-BEJ722

Jain, R., Khan, N., Menzel, A., Rajkovic, I., Konrad, M. and Techert, S. (B10)
Insights into open/closed conformations of the catalytically active human guanylate kinase as investigated by small-angle X-ray scattering.
Eur Biophys J, 45(1), DOI:10.1007/s00249-015-1079-9

Wallentin, J., Osterhoff, M. and Salditt, T. (C01)
In Operando X-Ray Nanodiffraction Reveals Electrically Induced Bending and Lattice Contraction in a Single Nanowire Device
Advanced materials, 28: 1788-1792, DOI:10.1002/adma.201504188

Hemonnot, C. J., Reinhardt, J., Saldanha, O., Patommel, J., Graceffa, R., Weinhausen, B., Burghammer, M., Schroer, C. G. and Köster, S. (C10)
X-Rays Reveal the Internal Structure of Keratin Bundles in Whole Cells
ACS Nano, 10(3): 3553-3561, DOI:10.1021/acsnano.5b07871

Bernhardt, M., Priebe, M., Osterhoff, M., Wollnik, C., Diaz, A., Salditt, T. and Rehfeldt, F. (B08, C01)
X-Ray Micro- and Nanodiffraction Imaging on Human Mesenchymal Stem
Cells and Differentiated Cells

Biophysical Journal, 110(3): 680-690, DOI:10.1016/j.bpj.2015.12.017

Krenkel, M., Töpperwien, M., Dullin, C., Alves, F. and Salditt, T. (C01)
Propagation-based phase-contrast tomography for high-resolution lung imaging with laboratory sources
AIP Advances, 6: 035007, DOI:10.1063/1.4943898

Ruhlandt, A. and Salditt, T. (C01)
Three-dimensional propagation in near-field tomographic X-ray phase retrieval
ActaCryst., A72: 215?221, DOI:org/10.1107/S2053273315022469

Vassholz, M., Koberstein-Schwarz, B., Ruhlandt, A., Krenkel, M. and Salditt, T. (C01)
New X-Ray Tomography Method Based on the 3D Radon Transform Compatible with Anisotropic Sources
PHYSICAL REVIEW LETTERS, 116: 088101

Zayko, S., M., S., Schäfer, S. and Ropers, C. (C08)
Polarization contrast of nanoscale waveguides in high harmonic imaging
Optica, 3(3): 240, DOI:org/10.1364/OPTICA.3.000239

König, C., Werner, F. and Hohage, T. (A04 and C02)
CONVERGENCE RATES FOR EXPONENTIALLY ILL-POSED INVERSE PROBLEMS WITH IMPULSIVE NOISE
SIAM J. NUMER. ANAL
Society for Industrial and Applied Mathematics, 54(1): 341?360, DOI:10.1137/15M1022252

Maretzke S. and Bartels, M., Krenkel, M., Salditt, T. and Hohage, T. (2016)
Regularized Newton methods for x-ray phase contrast and general imaging problems
OPTICS EXPRESS, 24(6): 6490, DOI:10.1364/OE.24.006490

Böhm, U., Hell, S. W. and Schmidt, R. (A01)
4Pi-RESOLFT nanoscopy
NATURE COMMUNICATION, DOI:DOI: 10.1038/ncomms10504


2015

Beinert, R. and Plonka, G. (C11)
Ambiguities in one‐dimensional phase retrieval of structured functions
PAMM - Proc. Appl. Math. Mech, 15: 653-654, DOI:10.1002/pamm.201510316

Maretzke, S. (C02)
A uniqueness result for propagation-based phase contrast imaging from a single measurement
Inverse Problems 31, 31: 065003 (16pp), DOI:10.1088/0266-5611/31/6/065003/meta

Aspelmeier, T., Egner, A. and Munk, A. (A06)
Modern Statistical Challenges in High-Resolution Fluorescence Microscopy
Annual Review of Statistics and Its Application, 2: 163-202, DOI:10.1146/annurev-statistics-010814-020343

Hartmann, A., Huckemann, S., Dannemann, J., Laitenberger, O., Geisler, C., Egner, A. and Munk, A. (A04, B08)
Drift estimation in sparse sequential dynamic imaging, with application to nanoscale fluorescence microscopy
Journal of the Royal Statistical Society: Series B (Statistical Methodology), DOI:doi: 10.1111/rssb.12128

Charitha, C., Dutta, J. and Luke, D. (A04, C02)
Lagrange Multipliers, (Exact) Regularization and Error Bounds for Monotone Variational Inequalities

Hesse, R., Luke, D., Sabach, S. and Tam, M. (C02)
Proximal Heterogeneous Block Implicit-Explicit Method and Application to Blind Ptychographic Diffraction Imaging
SIAM J. on Imaging Science, 8(1): 426-457

Peter, P., Weickert, J., Munk, A., Krivobokova, T. and Li, H. (A04, B08)
Justifying Tensor-Driven Diffusion from Structure-Adaptive Statistics of Natural Images
Energy Minimization Methods in Computer Vision and Pattern Recognition,,(Volume 8932 of the series Lecture Notes in Computer Science): 263-277

Munk, A. and Werner, F. (A07)
Discussion of "Hypotheses testing by convex optimization"
Electronic Journal of Statistics, 9(2): 1720-1722

Ta, H., Keller, J., Haltmeier, M., Saka, S. K., Schmied, J., Opazo, F., Tinnefeld, P., Munk, A. and 1, S. W. H. (A07)
Mapping molecules in scanning far-field fluorescence nanoscopy
NATURE COMMUNICATIONS, 6: 1-7, DOI:10.1038/ncomms8977

Mey, T., Zayko, S., Ropers, C., Schäfer, B. and Mann, K. (C08)
Toroidal grating astigmatism of high-harmonics characterized by EUV Hartmann sensor
Optics Express, 23: 15310-15315, DOI:10.1364/OE.23.015310

Keitel, B., Plönjes, E., Kreis, S., Kuhlmann, M., Tiedtke, K., Mey, T., Schäfer, B. and Mann, K. (C08)
Hartmann wavefront sensors and their application at FLASH
JOURNAL OF SYNCHROTRONRADIATION, 23: 43-49, DOI:10.1107/S1600577515020354

Block, J., Schroeder, V., Pawelzyk, P., Willenbacher, N. and Köster, S. (B07, C10)
Physical properties of cytoplasmic intermediate filaments
ELSEVIER, 1853: 3053, DOI:doi:10.1016/j.bbamcr.2015.05.009

T. Salditt, Hoffmann, S., Vassholz, M., Haber, J., Osterhoff, M. and Hilhorst, J. (C01)
X-Ray Optics on a Chip: Guiding X Rays in Curved Channels
Physical Review Letters, 115: 203902, DOI:10.1103/PhysRevLett115.203902

Gruner, P., B. Riechers B. Semin, J. L. A. J. K. S. and Baret, J.-C. (B12)
Controlling molecular transport in minimal emulsions
Nature Communicatons, DOI:Doi: 10.1038

Wiederschein, F., Vöhringer-Martinez, E., Beinsen, A., Postberg, F., Schmidt, J., Srama, R., Stolz, F., Grubmüller, H. and Abel, B. (B04)
Charge separation and isolation in strong water droplet impacts
Phys.Chem.Chem.Phys., 17: 6858, DOI:10.1039/c4cp05618c

Wallentin, J., Wilke, R. N., Osterhoff, M. and Salditt, T. (2015)
Simultaneous high-resolution scanning Bragg contrast and ptychographic imaging of a single solar cell nanowire
Journal of Applied Crystallography, 48: 1818

Markus Osterhoff, Florian Döring, Christian Eberl, Robin Wilke, J. Wallentin, Hans-Ulrich Krebs, M. Sprung, Tim Salditt (C12)
Progress on multi-order hard x-ray imaging with multilayer zone plates
Proc. SPIE 9592, X-Ray Nanoimaging: Instruments and Methods II, 9592, DOI:10.1117/12.2187799

Eberl C.; Osterhoff, M. Döring. F.; Krebs. H.-U. (C12)
MZP design and fabrication for efficient hard x-ray nano-focusing and imaging
Proc. SPIE 9588, Advances in X-Ray/EUV Optics and Components X, DOI:10.1117/12.2187788

Robisch, A.-L., Kröger, K., Rack, A. and Salditt, T. (C01)
Near-field ptychography using lateral and longitudinal shifts
New J. Phys., 17: 073033, DOI:10.1088/1367-2630/17/7/073033

Chen, H.-Y., Hoffmann, S. and Salditt, T. (C01)
X-ray beam compression by tapered waveguides
Appl. Phys. Lett., 106: 194105, DOI:10.1063/1.4921095

Eltzner, B., Wollnik, C., Gottschlich, C., Huckemann, S. and Rehfeldt, F. (B08)
The Filament Sensor for Near Real-Time Detection of Cytoskeletal Fiber Structures
PLOS ONE: 1-16, DOI:10.1371/journal.pone.0126346

Beinert, R. and Plonka, G. (2015)
Ambiguities in One-Dimensional Discrete Phase Retrieval from Fourier Magnitudes
J Fourier Anal Appl, DOI:10.1007/s00041-015-9405-2

Martin Krenkel, Andrea Markus, Matthias Bartels, Christian Dullin, Frauke Alves, and Tim Salditt (C01)
Phase-contrast zoom tomography reveals precise locations of macrophages in mouse lungs
Scientific Reports, 5:09973, DOI:10.1038/srep09973

Bartels, M., Krenkel, M., Haber, J., Wilke R. N. and Salditt, T. (C01)
X-Ray Holographic Imaging of Hydrated Biological Cells in Solution
Phys. Rev. Lett., 114(4): 048103, DOI:10.1103/PhysRevLett.114.048103

Heidemann, K. M., Sharma, A., Rehfeldt, F., Schmidt, C. F. and Wardetzky, M. (A03)
Elasticity of 3D networks with rigid filaments and compliant crosslinks
Soft Matter, 11: 343-354, DOI:10.1039/C4SM01789G

Homann, C., Hohage, T., Hagemann, J., Robisch, A. and Salditt, T. (C01, C02)
Validity of the empty-beam correction in near-field imaging
Phys. Rev. A, 91: 013821, DOI:10.1103/PhysRevA.91.013821

Koester, S., Weitz, D. A., Goldman, R. D., Aebi, U. and Herrmann, H. (B07,C10)
Intermediate filament mechanics in vitro and in the cell: from coiled coils to filaments, fibers and networks
Current Opinion in Cell Biology, 32: 82 - 91, DOI:10.1016/j.ceb.2015.01.001

Osterhoff, M., Eberl, C., Döring, F., Wilke, R., Wallentin, J., Krebs, H., Sprung, M. and Salditt, T. (C01, C04)
Towards multi-order hard x-ray imaging with multilayer zone plates
J. Apply. Cryst.open access,, 48: 116-124, DOI:10.1107/S1600576714026016

Werner, F. (C09)
On convergence rates for iteratively regularized Newton-type methods under a Lipschitz-type nonlinearity condition
J. Inverse Ill-Posed Probl., DOI:10.1515/jiip-2013-0074


2014

Haltmeier, M. and Munk, A. (A04)
Extreme value analysis of empirical frame coefficients and implications for denoising by soft-thresholding
Applied and Computational Harmonic Analysis, 36(3): 434-460, DOI:10.1016/j.acha.2013.07.004

Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
Restricted normal cones and sparsity optimization with affine constraints
Foundations of Computational Mathematicsopen access,, 14(1): 63, DOI:10.1007/s10208-013-9161-0

Brennich, M. E., Bauch, S., Vainio, U., Wedig, T., Herrmann, H. and Köster, S. (B07)
Impact of ion valency on the assembly of vimentin studied by quantitative small angle X-ray scattering
Soft Matter, 10(12): 2059, DOI:10.1039/c3sm52532e

Charitha, C., Dutta, J. and Lalitha, C. S. (A04)
Gap functions for vector variational inequalities
OptimizationTaylor & Francis,(March): 1-22, DOI:10.1080/02331934.2014.888556

Dammann, C. and Köster, S. (B07)
Dynamics of counterion-induced attraction between vimentin filaments followed in microfluidic drops.
Lab Chip, 14(15): 2681-7, DOI:10.1039/c3lc51418h

Debnarova, A., Techert, S. and Schmatz, S. (B03)
Contribution of Coulomb explosion to form factors and mosaicity spread in single particle X-ray scattering.
Phys. Chem. Chem. Phys., 16(2): 792-8, DOI:10.1039/c3cp54011a

Eberl, C., Döring, F., Liese, T., Schlenkrich, F., Roos, B., Hahn, M., Hoinkes, T., Rauschenbeutel, A., Osterhoff, M., Salditt, T. and Krebs, H.-U. (C04,C12)
Fabrication of laser deposited high-quality multilayer zone plates for hard X-ray nanofocusing
Appl. Surf. Sci., 307: 638-644, DOI:10.1016/j.apsusc.2014.04.089

Frick, K., Munk, A. and Sieling, H. (A07)
Multiscale change point inference
J. R. Stat. Soc. Ser. B (Statistical Methodol., 76(3): 495-580, DOI:10.1111/rssb.12047

Graen, T. M. D., Hoefling, M. and Grubmüller, H. (A05)
AMBER-DYES: Characterization of Charge Fluctuations and Force Field Parameterization of Fluorescent Dyes for Molecular Dynamics Simulations
J. Chem. Theory Comput., DOI:10.1021/ct500869p

Hafi, N., Grunwald, M., van den Heuvel, L. S., Aspelmeier, T., Chen, J.-H., Zagrebelsky, M., Schütte, O. M., Steinem, C., Korte, M., Munk, A. and Walla, P. J. (A04,A06)
Fluorescence nanoscopy by polarization modulation and polarization angle narrowing.
Nat. Methods, 11(5): 579-84, DOI:10.1038/nmeth.2919

Hagemann, J., Robisch, A. and Luke, D. (C01,C02)
Reconstruction of wave front and object for inline holography from a set of detection planes
Opt. Express, 22(10): 195-202, DOI:10.1364/OE.22.011552

Hartmann, A., Huckemann, S., Dannemann, J., Laitenberger, O., Geisler, C., Egner, A. and Munk, A. (A06,B08)
Drift Estimation in Sparse Sequential Dynamic Imaging: with Application to Nanoscale Fluorescence Microscopy
arXivopen access,

Hesse, R., Luke, D. R. and Neumann, P. (A04,C02)
Alternating Projections and Douglas-Rachford for Sparse Affine Feasibility
IEEE Trans. Signal Process., 62(18): 4868-4881, DOI:10.1109/TSP.2014.2339801

Hesse, R., Luke, D. R., Sabach, S. and Tam, M. K. (C02)
Proximal Heterogeneous Block Input-Output Method and application to Blind Ptychographic Diffraction Imaging
arXiv: 1-32

Hohage, T. and Homann, C. (C02)
A Generalization of the Chambolle-Pock Algorithm to Banach Spaces with Applications to Inverse Problems
arXiv: 1

Honigmann, A., Mueller, V., Ta, H., Schoenle, A., Sezgin, E., Hell, S. W. and Eggeling, C. (B11)
Scanning STED-FCS reveals spatiotemporal heterogeneity of lipid interaction in the plasma membrane of living cells.
Nat. Commun.Nature Publishing Group,, 5: 5412, DOI:10.1038/ncomms6412

Jensen, N. a., Danzl, J. G., Willig, K. I., Lavoie-Cardinal, F., Brakemann, T., Hell, S. W. and Jakobs, S. (B10)
Coordinate-targeted and coordinate-stochastic super-resolution microscopy with the reversibly switchable fluorescent protein dreiklang.
Chemphyschem, 15(4): 756-62, DOI:10.1002/cphc.201301034

Kaliman, S., Jayachandran, C., Rehfeldt, F. and Smith, A.-S. (A03,B08)
Novel growth regime of MDCK II model tissues on soft substrates.
Biophys. J., 106(7): L25-8, DOI:10.1016/j.bpj.2013.12.056

Kia, R., Scholz, M., Raithby, P. R. and Techert, S. (B03)
Homoleptic tetraazaphenanthrene-based copper(I) complexes: Synthesis, spectroscopic characterization, crystal structures and computational studies
Inorganica Chim. ActaElsevier B.V.,, 423: 348-357, DOI:10.1016/j.ica.2014.08.052

Loock, S. and Plonka, G. (C11)
Phase retrieval for Fresnel measurements using a shearlet sparsity constraint
Inverse Probl., 30(5): 055005, DOI:10.1088/0266-5611/30/5/055005

Müller, M., Mey, T., Niemeyer, J. and Mann, K. (C04)
Table-top soft x-ray microscope using laser-induced plasma from a pulsed gas jet.
Opt. Express, 22(19): 23489-95, DOI:10.1364/OE.22.023489

Mey, T., Schäfer, B., Mann, K., Keitel, B., Kuhlmann, M. and Plönjes, E. (C08)
Wigner distribution measurements of the spatial coherence properties of the free-electron laser FLASH.
Opt. Express, 22(13): 16571-84, DOI:10.1364/OE.22.016571

Mey, T., Schäfer, B. and Mann, K. (C08)
Measurement of the Wigner distribution function of non-separable laser beams employing a toroidal mirror
New Journal of Physics, 16: 123042, DOI:doi:10.1088/1367-2630/16/12/123042

Nöding, B., Herrmann, H. and Köster, S. (B07)
Direct Observation of Subunit Exchange Along Mature Vimentin Intermediate Filaments
Biophysical Journal: accepted for publication

Piazza, V., Weinhausen, B., Diaz, A., Dammann, C., Maurer, C., Reynolds, M., Burghammer, M. and Köster, S. (C10)
Revealing the Structure of Stereociliary Actin by X-Ray Nano-Imaging
ACS Nano, DOI:10.1021/nn5041526

Ruhlandt, A., Krenkel, M., Bartels, M. and Salditt, T. (C01)
Three-dimensional phase retrieval in propagation-based phase-contrast imaging
Phys. Rev. A, 89(3): 033847, DOI:10.1103/PhysRevA.89.033847

Schreck, S., Beye, M., Sellberg, J. a., McQueen, T., Laksmono, H., Kennedy, B., Eckert, S., Schlesinger, D., Nordlund, D., Ogasawara, H., Sierra, R. G., Segtnan, V. H., Kubicek, K., Schlotter, W. F., Dakovski, G. L., Moeller, S. P., Bergmann, U., Techert, S., Pettersson, L. G. M., Wernet, P., Bogan, M. J., Harada, Y., Nilsson, A. and Föhlisch, A. (B03)
Reabsorption of Soft X-Ray Emission at High X-Ray Free-Electron Laser Fluences
Phys. Rev. Lett., 113(15): 153002, DOI:10.1103/PhysRevLett.113.153002

Thekku Veedu, S., Raiser, D., Kia, R., Scholz, M. and Techert, S. (B10)
Ultrafast dynamical study of pyrene-N,N-dimethylaniline (PyDMA) as an organic molecular diode in solid state.
J. Phys. Chem. B, 118(12): 3291-7, DOI:10.1021/jp4121222

Thekku Veedu, S., Scholz, M., Kia, R., Paulmann, C. and Techert, S. (B10)
N,N-Dimethyl-4-(pyren-1-yl)aniline.
Acta Crystallogr. Sect. E. Struct. Rep. OnlineInternational Union of Crystallography,, 70(Pt 1): o16, DOI:10.1107/S1600536813032698

Walczak, M. (B04)
Bayesian structure reconstruction from single molecule X-ray scattering data
Georg-August University Göttingen,

Walczak, M. and Grubmüller, H. (B04)
Bayesian orientation estimate and structure information from sparse single-molecule x-ray diffraction images
Phys. Rev. E, 90(2): 022714, DOI:10.1103/PhysRevE.90.022714

Weinhausen, B., Saldanha, O., Wilke, R. N., Dammann, C., Priebe, M., Burghammer, M., Sprung, M. and Köster, S. (C10)
Scanning X-Ray Nanodiffraction on Living Eukaryotic Cells in Microfluidic Environments
Phys. Rev. Lett., 112(8): 088102, DOI:10.1103/PhysRevLett.112.088102

Wilke, R. N., Quéric, N., Hoppert, M., Heller, C., Schropp, A., Schroer, C., Burghammer, M., Salditt, T. and Reitner, J. (C10)
Scanning Hard X-ray Microscopy Imaging Modalities for Geobiological Samples
Geomicrobiology Journal, accepted for publication, DOI:10.1107/S0108767313019612

Wilke, R. N., Wallentin, J., Osterhoff, M., Pennicard, D., Zozulya, A., Sprung, M. and Salditt, T. (C10)
High-flux ptychographic imaging using the new 55 µm-pixel detector `Lambda' based on the Medipix3 readout chip
Acta Crystallogr. Sect. A Found. Adv.International Union of Crystallography,, 70(6): 552-562, DOI:10.1107/S2053273314014545

Yin, Z., Rajkovic, I., Kubicek, K., Quevedo, W., Pietzsch, A., Wernet, P., Föhlisch, A. and Techert, S. (B03,B10)
Probing the Hofmeister effect with ultrafast core-hole spectroscopy.
J. Phys. Chem. B, 118(31): 9398-403, DOI:10.1021/jp504577a


2013

Bartels, M., Hernandez, V. H., Krenkel, M., Moser, T. and Salditt, T. (C01)
Phase contrast tomography of the mouse cochlea at microfocus x-ray sources
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Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
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Bauschke, H. H., Luke, D. R., Phan, H. M. and Wang, X. (A04)
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Boll, R., Anielski, D., Bostedt, C., Bozek, J., Christensen, L., Coffee, R., De, S., Decleva, P., Epp, S., Erk, B., Foucar, L., Krasniqi, F., Küpper, J., Rouzée, A., Rudek, B., Rudenko, A., Schorb, S., Stapelfeldt, H., Stener, M., Stern, S., Techert, S., Trippel, S., Vrakking, M., Ullrich, J. and Rolles, D. (B03)
Femtosecond photoelectron diffraction on laser-aligned molecules: Towards time-resolved imaging of molecular structure
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Brennich, M. E. and Köster, S. (B07)
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Döring, F., Robisch, A., Eberl, C., Osterhoff, M., Ruhland, A., Liese, T., Schlenkrich, F., Hoffmann, S., Bartels, M., Salditt, T. and Krebs, H. U. (C04,C12)
Sub-5 nm hard x-ray point focusing by a combined Kirkpatrick-Baez mirror and multilayer zone plate
Opt. Express, 21(16): 19311, DOI:10.1364/OE.21.019311

Eberl, C., Liese, T., Schlenkrich, F., Döring, F., Hofsäss, H. and Krebs, H.-U. (C04,C12)
Enhanced resputtering and asymmetric interface mixing in W/Si multilayers
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Giewekemeyer, K., Wilke, R. N., Osterhoff, M., Bartels, M., Kalbfleisch, S. and Salditt, T. (C10)
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Groenhof, G. (B04)
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Hesse, R. and Luke, D. R. (C02)
Nonconvex Notions of Regularity and Convergence of Fundamental Algorithms for Feasibility Problems
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Hoefling, M. and Grubmüller, H. (A05)
In silico FRET from simulated dye dynamics
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Hohage, T. and Werner, F. (C09)
Convergence Rates for Inverse Problems with Impulsive Noise
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Inhester, L. (B04)
Auger decay in double core ionized molecules
Georg-August University Göttingen,

Inhester, L., Groenhof, G. and Grubmüller, H. (B04)
Core hole screening and decay rates of double core ionized first row hydrides.
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Jain, R., Petri, M., Kirschbaum, S., Feindt, H., Steltenkamp, S., Sonnenkalb, S., Becker, S., Griesinger, C., Menzel, A., Burg, T. P. and Techert, S. (B03)
X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations.
Eur. Phys. J. E. Soft Matter, 36(9): 109, DOI:10.1140/epje/i2013-13109-9

Krenkel, M., Bartels, M. and Salditt, T. (C01)
Transport of intensity phase reconstruction to solve the twin image problem in holographic x-ray imaging.
Opt. Express, 21(2): 2220-35

Kress, R. and Rundell, W. (C02)
Reconstruction of extended sources for the Helmholtz equation
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Li, H., Haltmeier, M., Zhang, S., Frahm, J. and Munk, A. (A06)
Aggregated motion estimation for real-time MRI reconstruction.
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Lim, J., Gruner, P., Konrad, M. and Baret, J.-C. (B12)
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Lim, J., Vrignon, J., Gruner, P., Karamitros, C. S., Konrad, M. and Baret, J.-C. (B12)
Ultra-high throughput detection of single cell $-galactosidase activity in droplets using micro-optical lens array
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Müller, M., Kühl, F.-C., Groß mann, P., Vrba, P. and Mann, K. (C04)
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Mai, D. D., Hallmann, J., Treusch, R., Singer, A., Beckers, M., Gorniak, T., Senkbeil, T., Dronyak, R., Gulden, J., Yefanov, O. M., Rosenhahn, A., Mancuso, A. P., Vartanyants, I. A. and Salditt, T. (C10)
Single pulse coherence measurements in the water window at the free-electron laser FLASH
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Mitzner, R., Rehanek, J., Kern, J., Gul, S., Hattne, J., Taguchi, T., Alonso-Mori, R., Tran, R., Weniger, C., Schröder, H., Quevedo, W., Laksmono, H., Sierra, R. G., Han, G., Lassalle-Kaiser, B., Koroidov, S., Kubicek, K., Schreck, S., Kunnus, K., Brzhezinskaya, M., Firsov, A., Minitti, M. P., Turner, J. J., Moeller, S., Sauter, N. K., Bogan, M. J., Nordlund, D., Schlotter, W. F., Messinger, J., Borovik, A., Techert, S., de Groot, F. M. F., Föhlisch, A., Erko, A., Bergmann, U., Yachandra, V. K., Wernet, P. and Yano, J. (B10)
L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser.
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Osterhoff, M., Bartels, M., Döring, F., Eberl, C., Hoinkes, T., Hoffmann, S., Liese, T., Radisch, V., Rauschenbeutel, A., Robisch, A.-L., Ruhland, A., Schlenkrich, F., Salditt, T. and Krebs, H.-U. (C04)
Two-dimensional sub-5nm hard x-ray focusing with MZP
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Osterhoff, M., Morawe, C., Ferrero, C. and Guigay, J.-P. (C12)
Optimized x-ray multilayer mirrors for single nanometer focusing
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Robisch, A. and Salditt, T. (C01)
Phase retrieval for object and probe using a series of defocus near-field images
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Schäfer, B., Mey, T., Mann, K., Keitel, B., Kreis, S., Kuhlmann, M., Plönjes-Palm, E. and Tiedtke, K. (C08)
Beam characterization of FLASH from beam profile measurement by intensity transport equation and reconstruction of the Wigner distribution function
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Schmidt-Hieber, J., Munk, A. and Dümbgen, L. (A07)
Multiscale methods for shape constraints in deconvolution: Confidence statements for qualitative features
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Sharma, A., Sheinman, M., Heidemann, K. M. and MacKintosh, F. C. (A03)
Elastic response of filamentous networks with compliant crosslinks
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Simao, C., Mas-Torrent, M., André, V., Teresa Duarte, M., Techert, S., Veciana, J. and Rovira, C. (B10)
Solid state photodimerisation of tetrathiafulvalene derivatives bearing carboxylate and carboxylic acid substituents
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Sivis, M., Duwe, M., Abel, B. and Ropers, C. (C08)
Extreme-ultraviolet light generation in plasmonic nanostructures
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Sivis, M. and Ropers, C. (C08)
Generation and Bistability of a Waveguide Nanoplasma Observed by Enhanced Extreme-Ultraviolet Fluorescence
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Thutupalli, S. and Herminghaus, S. (B12)
Tuning active emulsion dynamics via surfactants and topology.
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Weinhausen, B. and Köster, S. (C10)
Microfluidic devices for X-ray studies on hydrated cells.
Lab Chip, 13(2): 212-5, DOI:10.1039/c2lc41014a

Wilke, R. N., Vassholz, M. and Salditt, T. (C10)
Semi-transparent central stop in high-resolution X-ray ptychography using Kirkpatrick-Baez focusing
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Yalunin, S. V., Herink, G., Solli, D. R., Krüger, M., Hommelhoff, P., Diehn, M., Munk, A. and Ropers, C. (A06,C08)
Field localization and rescattering in tip-enhanced photoemission
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Yin, Z., Rajković, I., Raiser, D., Scholz, M. and Techert, S. (B03)
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Baret, J.-C. (B12)
Surfactants in droplet-based microfluidics.
Lab Chip, 12(3): 422-33, DOI:10.1039/c1lc20582j

Bartels, M., Priebe, M., Wilke, R. N., Krüger, S. P., Giewekemeyer, K., Kalbfleisch, S., Olendrowitz, C., Sprung, M. and Salditt, T. (C01)
Low-dose three-dimensional hard x-ray imaging of bacterial cells
Opt. Nanoscopyopen access,, 1(1): 10, DOI:10.1186/2192-2853-1-10

Beerlink, A., Thutupalli, S., Mell, M., Bartels, M., Cloetens, P., Herminghaus, S. and Salditt, T. (B12)
X-Ray propagation imaging of a lipid bilayer in solution
Soft Matter, 8(17): 4595, DOI:10.1039/c2sm00032f

Bremerich, M. (A03)
High-bandwidth microrheology of cytoskeletal networks
Georg-August-University Göttingen,

Döring, S., Hertlein, F., Bayer, A. and Mann, K. (C04)
EUV reflectometry for thickness and density determination of thin film coatings
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Dammann, C., Nöding, B. and Köster, S. (B07)
Vimentin networks at tunable ion-concentration in microfluidic drops.
Biomicrofluidics, 6(2): 22009-2200910, DOI:10.1063/1.4705103

Debnarova, A., Techert, S. and Schmatz, S. (B03)
Limitations of high-intensity soft X-ray laser fields for the characterisation of water chemistry: Coulomb explosion of the octamer water cluster.
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Enderlein, J. (A05)
Modification of förster resonance energy transfer efficiency at interfaces.
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Enderlein, J. (A05)
Polymer Dynamics, Fluorescence Correlation Spectroscopy, and the Limits of Optical Resolution
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Frick, K. and Marnitz, P. (A4)
A Statistical Multiresolution Strategy for Image Reconstruction
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Frick, K., Marnitz, P. and Munk, A. (A04)
Statistical multiresolution Dantzig estimation in imaging: Fundamental concepts and algorithmic framework
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Frick, K., Marnitz, P. and Munk, A. (A04)
Shape-constrained regularization by statistical multiresolution for inverse problems: asymptotic analysis
Inverse Probl., 28(6): 065006, DOI:10.1088/0266-5611/28/6/065006

Frick, K., Marnitz, P. and Munk, A. (A04)
Statistical Multiresolution Estimation for Variational Imaging: With an Application in Poisson-Biophotonics
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Geisler, C., Hotz, T., Schönle, A., Hell, S. W., Munk, A. and Egner, A. (A06)
Drift estimation for single marker switching based imaging schemes.
Opt. Express, 20(7): 7274-89

Grossmann, P., Rajkovic, I., Moré, R., Norpoth, J., Techert, S., Jooss, C. and Mann, K. (B03,C04)
Time-resolved near-edge x-ray absorption fine structure spectroscopy on photo-induced phase transitions using a tabletop soft-x-ray spectrometer.
Rev. Sci. Instrum., 83(5): 053110, DOI:10.1063/1.4718936

Grotjohann, T., Testa, I., Reuss, M., Brakemann, T., Eggeling, C., Hell, S. W. and Jakobs, S. (B10)
rsEGFP2 enables fast RESOLFT nanoscopy of living cells.
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Haltmeier, M. and Munk, A. (A04)
Extreme Value Analysis of Empirical Frame Coefficients and Implications for Denoising by Soft-Thresholding
Appl. Comput. Harmon. Anal., 36: 434, DOI:10.1016/j.acha.2013.07.004

Hohage, T. and Werner, F. (C02,C09)
Iteratively regularized Newton-type methods for general data misfit functionals and applications to Poisson data
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Inhester, L., Burmeister, C. F., Groenhof, G. and Grubmüller, H. (B04)
Auger spectrum of a water molecule after single and double core ionization.
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Köster, S. and Pfohl, T. (B07,C10)
x-ray studies of biological matter in microfluidic environments
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Krüger, S. P., Neubauer, H., Bartels, M., Kalbfleisch, S., Giewekemeyer, K., Wilbrandt, P. J., Sprung, M. and Salditt, T. (C01)
Sub-10 nm beam confinement by X-ray waveguides: design, fabrication and characterization of optical properties.
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Kunnus, K., Rajkovic, I., Schreck, S., Quevedo, W., Eckert, S., Beye, M., Suljoti, E., Weniger, C., Kalus, C., Grübel, S., Scholz, M., Nordlund, D., Zhang, W., Hartsock, R. W., Gaffney, K. J., Schlotter, W. F., Turner, J. J., Kennedy, B., Hennies, F., Techert, S., Wernet, P. and Föhlisch, A. (B03)
A setup for resonant inelastic soft x-ray scattering on liquids at free electron laser light sources.
Rev. Sci. Instrum., 83(12): 123109, DOI:10.1063/1.4772685

Luke, D. R. (C02)
Local linear convergence of approximate projections onto regularized sets
Nonlinear Anal. Theory, Methods Appl., 75(3): 1531-1546, DOI:10.1016/j.na.2011.08.027

Müller, M., Barkusky, F., Feigl, T. and Mann, K. (C04)
EUV damage threshold measurements of Mo/Si multilayer mirrors
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Mey, T., Rein, M., Groß mann, P. and Mann, K. (C04)
Brilliance improvement of laser-produced soft x-ray plasma by a barrel shock
New J. Phys., 14(7): 073045, DOI:10.1088/1367-2630/14/7/073045

Nöding, B. and Köster, S. (B07)
Intermediate Filaments in Small Configuration Spaces
Phys. Rev. Lett., 108(8): 088101, DOI:10.1103/PhysRevLett.108.088101

Nijenhuis, N., Mizuno, D., Spaan, J. A. E. and Schmidt, C. F. (A03)
High-resolution microrheology in the pericellular matrix of prostate cancer cells.
J. R. Soc. Interface, 9(73): 1733-44, DOI:10.1098/rsif.2011.0825

Olendrowitz, C., Bartels, M., Krenkel, M., Beerlink, A., Mokso, R., Sprung, M. and Salditt, T. (C01)
Phase-contrast x-ray imaging and tomography of the nematode Caenorhabditis elegans.
Phys. Med. Biol., 57(16): 5309-23, DOI:10.1088/0031-9155/57/16/5309

Osterhoff, M., Morawe, C., Ferrero, C. and Guigay, J.-P. (C12)
Wave-optical theory of nanofocusing x-ray multilayer mirrors.
Opt. Lett., 37(17): 3705-7

Paarmann, A., Gulde, M., Müller, M., Schäfer, S., Schweda, S., Maiti, M., Xu, C., Hohage, T., Schenk, F., Ropers, C. and Ernstorfer, R. (C08)
Coherent femtosecond low-energy single-electron pulses for time-resolved diffraction and imaging: A numerical study
J. Appl. Phys., 112(11): 113109, DOI:10.1063/1.4768204

Plonka, G. and Wischerhoff, M. (C11)
How many Fourier samples are needed for real function reconstruction?
J. Appl. Math. Comput., 42(1-2): 117-137, DOI:10.1007/s12190-012-0624-2

Quevedo, W., Busse, G., Hallmann, J., Moré, R., Petri, M., Krasniqi, F., Rudenko, a., Tschentscher, T., Stojanovic, N., Düsterer, S., Treusch, R., Tolkiehn, M., Techert, S. and Rajkovic, I. (B03)
Ultrafast time dynamics studies of periodic lattices with free electron laser radiation
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Skhiri, Y., Gruner, P., Semin, B., Brosseau, Q., Pekin, D., Mazutis, L., Goust, V., Kleinschmidt, F., El Harrak, A., Hutchison, J. B., Mayot, E., Bartolo, J.-F., Griffiths, A. D., Taly, V. and Baret, J.-C. (B12)
Dynamics of molecular transport by surfactants in emulsions
Soft Matter, 8(41): 10618, DOI:10.1039/c2sm25934f

Weinhausen, B., Nolting, J.-F., Olendrowitz, C., Langfahl-Klabes, J., Reynolds, M., Salditt, T. and Köster, S. (C10)
X-ray nano-diffraction on cytoskeletal networks
New J. Phys.open access,, 14(8): 085013, DOI:10.1088/1367-2630/14/8/085013

Werner, F. and Hohage, T. (C09)
Convergence rates in expectation for Tikhonov-type regularization of inverse problems with Poisson data
Inverse Probl., 28(10): 104004, DOI:10.1088/0266-5611/28/10/104004

Wilke, R. N., Priebe, M., Bartels, M., Giewekemeyer, K., Diaz, A., Karvinen, P. and Salditt, T. (C01)
Hard X-ray imaging of bacterial cells: nano-diffraction and ptychographic reconstruction
Opt. Express, 20(17): 19232-54


2011

Aquino, D., Schönle, A., Geisler, C., Middendorff, C. V., Wurm, C. a., Okamura, Y., Lang, T., Hell, S. W. and Egner, A. (A01,A06)
Two-color nanoscopy of three-dimensional volumes by 4Pi detection of stochastically switched fluorophores.
Nat. Methods, 8(4): 353-9, DOI:10.1038/nmeth.1583

Barkusky, F., Bayer, A. and Mann, K. (C04)
Ablation of polymers by focused EUV radiation from a table-top laser-produced plasma source
Appl. Phys. A, 105(1): 17-23, DOI:10.1007/s00339-011-6540-8

van den Bogaart, G., Thutupalli, S., Risselada, J. H., Meyenberg, K., Holt, M., Riedel, D., Diederichsen, U., Herminghaus, S., Grubmüller, H. and Jahn, R. (B04)
Synaptotagmin-1 may be a distance regulator acting upstream of SNARE nucleation.
Nat. Struct. Mol. Biol.Nature Publishing Group,, 18(7): 805-12, DOI:10.1038/nsmb.2061

Boggio-Pasqua, M. and Groenhof, G. (B04)
Controlling the photoreactivity of the photoactive yellow protein chromophore by substituting at the p-coumaric acid group.
J. Phys. Chem. B, 115(21): 7021-8, DOI:10.1021/jp108977x

Brennich, M. E., Nolting, J.-F., Dammann, C., Nöding, B., Bauch, S., Herrmann, H., Pfohl, T. and Köster, S. (B07)
Dynamics of intermediate filament assembly followed in micro-flow by small angle X-ray scattering.
Lab Chip, 11(4): 708-16, DOI:10.1039/c0lc00319k

Debnarova, A., Techert, S. and Schmatz, S. (B03)
Computational studies of the x-ray scattering properties of laser aligned stilbene.
J. Chem. Phys., 134(5): 054302, DOI:10.1063/1.3523569

Flöter, B., Juranić, P., Großmann, P., Kapitzki, S., Keitel, B., Mann, K., Plönjes, E., Schäfer, B. and Tiedtke, K. (C08)
Beam parameters of FLASH beamline BL1 from Hartmann wavefront measurements
Nucl. Instruments Methods Phys. Res. Sect. A Accel. Spectrometers, Detect. Assoc. Equip., 635(1): S108-S112, DOI:10.1016/j.nima.2010.10.016

Giewekemeyer, K., Krüger, S. P., Kalbfleisch, S., Bartels, M., Beta, C. and Salditt, T. (C01)
X-ray propagation microscopy of biological cells using waveguides as a quasipoint source
Phys. Rev. A, 83(2): 023804, DOI:10.1103/PhysRevA.83.023804

Hotz, T., Marnitz, P., Stichtenoth, R., Davies, L., Kabluchko, Z. and Munk, A. (A04)
Locally adaptive image denoising by a statistical multiresolution criterion
Comput. Stat. Data Anal.Elsevier B.V.,, 56(3): 543-558, DOI:10.1016/j.csda.2011.08.018

Hua, Y., Sinha, R., Thiel, C. S., Schmidt, R., Hüve, J., Martens, H., Hell, S. W., Egner, A. and Klingauf, J. (A01)
A readily retrievable pool of synaptic vesicles.
Nat. Neurosci.Nature Publishing Group,, 14(7): 833-9, DOI:10.1038/nn.2838

Ivanyshyn, O. and Kress, R. (C2)
Inverse scattering for surface impedance from phase-less far field data
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Liese, T., Radisch, V., Knorr, I., Reese, M., Groß mann, P., Mann, K. and Krebs, H.-U. (C04,C05)
Development of laser deposited multilayer zone plate structures for soft X-ray radiation
Appl. Surf. Sci.Elsevier B.V.,, 257(12): 5138-5141, DOI:10.1016/j.apsusc.2010.10.076

Okamura, Y., Schmidt, R., Raschke, I., Hintze, M., Takeoka, S., Egner, A. and Lang, T. (A01)
A few immobilized thrombins are sufficient for platelet spreading.
Biophys. J.Biophysical Society,, 100(8): 1855-63, DOI:10.1016/j.bpj.2011.02.052

Osterhoff, M. and Salditt, T. (C12)
Partially coherent x-ray beam simulations: mirrors and more
Adv. Comput. Methods X-Ray Opt. IISPIE,(1): 81410C-81410C-10, DOI:10.1117/12.893003

Osterhoff, M. and Salditt, T. (C12)
Coherence filtering of x-ray waveguides: analytical and numerical approach
New J. Phys.open access,, 13(10): 103026, DOI:10.1088/1367-2630/13/10/103026

Petri, M., Menzel, A., Bunk, O., Busse, G. and Techert, S. (B03)
Concentration effects on the dynamics of liquid crystalline self-assembly: time-resolved X-ray scattering studies.
J. Phys. Chem. A, 115(11): 2176-83, DOI:10.1021/jp1108224

Salditt, T., Kalbfleisch, S., Osterhoff, M., Krüger, S. P., Bartels, M., Giewekemeyer, K., Neubauer, H. and Sprung, M. (C01)
Partially coherent nano-focused x-ray radiation characterized by Talbot interferometry
Opt. Express, 19(10): 9656-75

Schäfer, B., Flöter, B., Mey, T., Juranic, P., Kapitzki, S., Keitel, B., Plönjes, E., Mann, K. and Tiedtke, K. (C08)
FEL beam characterization from measurements of the Wigner distribution function
Nucl. Instruments Methods Phys. Res. Sect. A Accel. Spectrometers, Detect. Assoc. Equip., 654(1): 502-507, DOI:10.1016/j.nima.2011.07.031

Schäfer, B. and Mann, K. (C08)
Characterization of an ArF excimer laser beam from measurements of the Wigner distribution function
New J. Phys., 13(4): 043013, DOI:10.1088/1367-2630/13/4/043013

Sedlmair, J., Gleber, S., Öztürk, S., Pfohl, T., Guttmann, P., Wirick, S. and Thieme, J. (C01)
X-Ray Spectromicroscopy of Biomolecular Matter and Soils


Sedlmair, J., Gleber, S.-C., Peth, C., Mann, K., Niemeyer, J. and Thieme, J. (C04)
Characterization of refractory organic substances by NEXAFS using a compact X-ray source
J. Soils Sedimentsopen access,, 12(1): 24-34, DOI:10.1007/s11368-011-0385-9

Thutupalli, S., Herminghaus, S. and Seemann, R. (B12)
Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 7(4): 1312, DOI:10.1039/c0sm00312c

Ullal, C. K., Primpke, S., Schmidt, R., Böhm, U., Egner, A., Vana, P. and Hell, S. W. (A01)
Flexible Microdomain Specific Staining of Block Copolymers for 3D Optical Nanoscopy
Macromolecules, 44(19): 7508-7510, DOI:10.1021/ma201504f


2010

A. Debnarova, S. Techert, and S. Schmatz (B 3)
Ab initio studies of ultrafast x-ray scattering of the photodissociation of iodine
THE JOURNAL OF CHEMICAL PHYSICS 133, 124309, 2010

I. Rajkovic, J. Hallmann, S. Grübel, R. More, W. Quevedo, M. Petri, S. Techert (B 3)
Development of a mulipurpose vacuum chamber for serial optical and diffraction experiments with free electron laser radiation
Rev. Sci. Instr., 81, 045105-1-6, 2010

I. Rajkovic, G. busse, J. Hallmann, R. More, M. Petri, W. Quevedo, F. Krasniqi, A. Rudenko, T. Tschentscher, N. Stojanovic, S. Düsterer, R. Treusch, M. Tolkiehn, S. Techert (B 3)
Diffraction Properties of Periodic Lattices under Free Electron Laser Radiation
PRL 104, 125503 (2010)


C.v. Middendorf, A. Egner, C. Geisler, S.W. Hell, A. Schoenle (A 1)
Isotropic 3D nanoscopy base on single emitter switching
Opt. Express, 2, 1-400, 2010


M. Priebe, S. Kalbfleisch, M. Tolkiehn, S. Köster, B. Abel, R. J. Davies and T. Salditt (Project B2, B7, C1) (C 1)
Orientation of biomolecular assemblies in a microfluidic jet
New Journal of Physics 12 (2010)


O. Ivanyshyn, R. Kress, P. Serranho, (C 2)
Huygens principle and iterative methods in inverse obstacle scattering.
Advances in Computational Mathematics 33, 413-429 (2010)


A. Munk, M. Pricop (A 4)
On the self-regularization property of the EM algorithm for Poisson inverse problems
Festschrift in Honour of Ludwig Fahrmeir, 431-446, Springer Verlag, 2010


F. C. MacKintosh and C. F. Schmidt (A 3)
Active cellular materials
Cell Biology 2010, 22:29–35, 2010


S. Köster, Y.C. Lin, H. Herrmann, D. Weitz (B 7)
Nanomechanics of vimentin intermediate filament networks
Soft Matter, 6, 1910-1914, 2010


O. Ivanyshyn, R. Kress (C 2)
Identification of sound-soft 3D obstacles from phaseless data
Inverse Problems and Imaging 4, 111-130 (2010)


F. Barkusky, A. Bayer, S. Döring, P. Grossmann, K. Mann (C 2)
Damage threshold measurements on EUV optics using focused radiation from a table-top laser produed plasma source
OPTICS EXPRESS Vol. 18, No. 5, 4346-4355, 2010


W. Quevedo, C. Peth, G. Busse, K. Mann, and S. Techert (B 3)
Nanosecond Dynamics of Photoexcited Lyotropic Liquid Crystal Structures
J. Phys. Chem. B 2010, 114, 8593–8599, 2010


J. Thieme, J. Sedlmair, S.-C. Gleber, J. Prietzel, J. Coates, K. Eusterhues, G. Abbt-Braun and M. Salome (B 3)
X-ray spectromicroscopy in soil and environmental sciences
J. Synchrotron Rad. 17, 149–157, 2010


K. Giewekemeyer, P. Thibault, S. Kalbfleisch, A. Beerlink, C. M. Kewish, M. Dierolf, F. Pfeiffer, T. Salditt (C 1)
Quantitative biological imaging by ptychographic x-ray diffraction microscopy
Proc. Nat. Acad. Sci. U.S.A., 107, 529-534, 2010


K. Giewekemeyer, H. Neubauer, S. Kalbfleisch, S. P. Krüger, and T Salditt (C 1)
Holographic and diffractive x-ray imaging using waveguides as quasi-point sources
New Journal of Physics 12, 035008, 2010


S. P. Krüger, K. Giewekemeyer, S. Kalbfleisch, M. Bartels, H. Neubauer, and T. Salditt (Project C5) (C 1)
Sub-15 nm beam confinement by two crossed x-ray waveguides
Opt. Express, 18, 13492-13501, 2010


Y. Iwashita, S. Herminghaus, R. Seemann, and C. Bahr (C 1)
Smectic membranes in aqueous environment
PHYSICAL REVIEW E 81, 051709, 2010


S. Thutupalli, S. Herminghaus and R. Seemann (C 1)
Bilayer membranes in micro-fluidics: from gel emulsions to soft functional devices
Soft Matter, 6, Advance Article, 2010, DOI: 10.1039


J. Röder, T. Liese, and H.-U. Krebs (C 4)
Material-dependent smoothing of periodic rippled structures by pulsed laser deposition
JOURNAL OF APPLIED PHYSICS 107, 103515, 2010


T. Liese, V. Radisch, H.-U. Krebs (C 4)
Fabrication of multilayer Laue lenses by a combination of pulsed laser deposition and focused ion beam
Rev. Sci. Instrum. 81 (2010) 073710


J. Hallmann, W. Quevedo, G. Grübel, I. Rajkovic, G. Busse, R. More, M. Petri, F. Krasniqi, A. Rudenko, S. Techert (B 3)
First steps towards probing chemical reaction dynamics with free electron laser radiation
J. Phys. B: At. Mol. Opt. Phys. (Special Issue Five Years of FLASH), 43, 194009-194016

J. Thieme, S.-C. Gleber, J. Sedlmair, J. Rieger, J. Niemeyer, J. Coates (B 3)
X-Ray Spectromicroscopy Studies of Nanoparticels in Aqueous Media
F. Frimmel, R. Niessner, eds., Nanoparticles in the Water Cycle:Properties, Analysis and Environmental Relevance", Springer-Verlag Heidelberg, 2010

J. Thieme, S.C. Gleber, J. Sedlmair, J. Rieger, J. Niemeyer, J. Coates (B 3)
X-Ray Spectromicroscopy Studies of Nanoparticles in Aqueous Media
DOI 10.1007/978-3-642-10318-6_7

A. Bayer, F. Barkusy, S. Döring, P. Großmann, K. Mann (C 4)
Applications of Compact Laser-Driven EUV/XUV Plasma Sources
X-Ray Optics and Instrumentation DOI 10.1155/2010/687496

F. Ben Hassen, O. Ivanyshyn, M. Sini (C 2)
The 3D acoustic scattering by complex obstacles. The accuracy issue.
Inverse Problems, 26, 105008, 2010


2009

F. Barkusky, A. Bayer, C. Peth, and K. Mann ()
Direct photoetching of polymers using radiation of high energy density from a table-top extreme ultraviolet plasma source
JOURNAL OF APPLIED PHYSICS 105, 014906 (2009)

M. Osterhoff and T. Salditt ()
Real structure effects in X-ray waveguide optics: The influence of interfacial roughness and refractive index profile on the near-field and far-field distribution
Optics Communication 282, 3250-256, 2009

R. Schmidt, C. A. Wurm, A. Punge, A. Egner, S. Jakobs, and S. W. Hell (A 1)
Mitochondrial Cristae Revealed with Focused Light
NANO LETTERS 2009, Vol.9, No. 6, 2508-2510

C. K. Ullal, R. Schmidt, S. W. Hell, and A. Egner (A 1)
Block Copolymer Nanostructures Mapped by Far-Field Optics
NANO LETTERS 2009, Vol. 9, No.6 2497-2500

N. Nijenhuis, D. Mizuno, J. & A. E. Spaan and C. F. Schmidt (A 3)
Viscoelastic response of a model endothelial glycocalyx
Physical Biology 292559, 14/01/2009

D. Mizuno, R. Bacabc, C. Tardin, D. Head and C. F. Schmidt (A 3)
High-resolution probing of cellular force transmission
Physical Review Letters PRL 102, 168102 (2009)

H. M. Evans, E. Surenjav, C. Priest, S. Herminghaus, R. Seemann and T. Pfohl (Project B1, C3) (A 3)
In situ formation, manipulation, and imaging of droplet-encapsulated fibrin networks
The Royal Society of Chemistry, Lab Chip, 2009, 9, 1933-1941

B. Enders, K. Giewekemeyer, T. Kurz, S. Podorov and T. Salditt (C 1)
Non-iterative coherent diffractive imaging using a phase-shifting reference frame
New Journal of Physics 11 (2009) 043021

T. Salditt, K. Giewekemeyer, C. Fuhse, S.P. Krüger, R. Tucoulou and P. Cloetens (C 1)
Projection phase contrast microscopy with a hard x-ray nanofucused beam: Defocus and contrast transfer
Physical Review B 79, 1 (2009)

J. Haas, E. Vöhringer-Martinez, A. Bögehold, D. Matthes, U. Hensen, A. Pelah, B. Abel, and H. Grubmüller (C 1)
Primary Steps of pH-Dependent Insulin Aggregation Kinetics are Governed by Conformational Flexibility
ChemBioChem 2009, 10, 1816 – 1822

S. W. Hell, R. Schmidt and A. Egner (A 1)
Diffraction-unlimited three-dimensional optical nanoscopy with opposing lenses
NATURE PHOTONICS Vol 3, July 2009

F. Barkusky, C. Peth, A. Bayer, K. Mann, J. John and P. E. Malinowski (A 1)
Radiation damage resistance of AlGaN detectors for applications in the extreme-ultraviolet spectral range
Review of Scientific Instruments, 80, 093102 (2009)

M. Petri, G. Busse, W. Quevedo, S. Techert (B 3)
Photo-Induced Phase Transitions to Liquid Crystal Phases: Influence of the Chain Length from C8E4 to C14E4
Materials 2009, 2 1305-1322; doi:10.3390/ma2031305

J. Hallmann, W. Morgenroth, C. Paulmann, J. Davaasambuu, Q.-Y. Kong, M. Wulff, S. Techert (B 3)
Time-resolved x-ray diffraction of the photochromic α-styrylpyrylium trifluoromethanesulfonate crystal films reveals ultrafast structural switching
J. Am. Chem. Soc.2009, 131, 15018-15025 (2009)

W. Quevedo, C. Peth, G. Busse, M. Scholz, K. Mann, S. Techert (Project C4) (B 3)
Time-resolved soft x-ray diffraction reveals transient structural distortions of ternary liquid crystals
Int. J. Mol. Sci. 2009, 10 4754-4771

J. Sedlmair, S.-C. Gleber, C. Peth, K. Mann and J. Thieme (Project C4) (B 3)
NEXAFS spectroscopy with a laser plasma x-ray source on soil samples
J Phys Conf Ser, 186 (2009)

J. Thieme, J. Sedlmair, S.-C. Gleber, M. Bertilson, O. v. Hofsten, P. Takman and H. M. Hertz (B 3)
High-resolution imaging of soil colloids in aqueous media with a compact soft X-ray microscope
J Phys Conf Ser, 186 (2009)

S. C. Gleber, J. Sedlmair, M. Bertilson, O. v. Hofsten, S. Heim, P. Guttmann, H. M. Hertz, P. Fischer and J. Thieme (B 3)
X-ray stereo microscopy for investigation of dynamics in soils
J Phys Conf Ser, 186 (2009)

E. Bosman, J. Thieme (B 3)
Modeling of XANES-Spectra with the FEFF-Program
J Phys Conf Ser, 186 (2009)

K. Giewekemeyer, M. Hantke, C. Beta, Tucoulou, T. Salditt (C 1)
Fluorescence imaging of dictyostelium discoideum with a hard X-ray nanoprobe
Journal of Physics: Conference Series, Vol. 186, 012086 (2009)

A. Beerlink, M. Mell, M. Tolkiehn, T. Salditt (C 1)
Hard x-ray phase contrast imaging of black lipid membranes
Applied Physics Letters 95, 203703 (2009)

E. M. Puchner, A. Alexandrovich, A. L. Kho, U. Hensen, L. V.Schäfer, B. Brandmeier, F. Gräter, H. Grubmüller, H. E. Gaub, M. Gautel (B 4)
Michanoenzymatics of titin kinase
PNAS no. 36 (2009) 13385-13390

B. Fuchs, F. Schlenkrich, S. Seyffahrth, A. Meschede, R. Rotzoll, P. Vana, P. Großmann, K. Mann, H.-U. Krebs (C 4)
Hardening of smooth pulsed laser deposited PMMA films by heating
Applied Physics A (2009) DOI 10.1007/s00339-009-5525-3

N. Bissantz, G. Claeskens, H. Holzmann, A. Munk (A 4)
Testing for lack of t in inverse regression with applications to biophotonic imaging
J. Royal Statist. Soc. B, 71, 25-48, 2009

C. Peth, F. Barkusky, J. Sedlmair, S.-C. Gleber, E. Novakova, J. Niemeyer, J. Thieme, T. Salditt, K. Mann (A 4)
Near-Edge X-Ray Absorption Fine Structure Measurements Using a Laser Plasma XUV Source
J. Phys. Conf. Ser., 186, 0120032, 2009

F. Bauer, T. Hohage, A. Munk (C 2)
Iteratively Regularized Gauss-Newton Methods for Nonlinear Inverse Problems with Random Noise
SIAM J. Numer. Anal., 47, 1827-1846, 2009

F. Barkusky,A. Bayer, C.Peth, K. Mann (C 2)
Direct photoetching of polymers using radiation of high energy density from a table-top extreme ultraviolet plasma source
JOURNAL OF APPLIED PHYSICS 105, 014906

T. Hohage, L. Nannen (C 2)
Hardy Space innite elements for scattering and resonance problems
SIAM J. Numer. Anal., 47, 972-996, 2009

E. Rapp, A. Charvat, A. Beinsen, U. Plessmann, U. Reichl, A. Seidel-Morgenstern, H. Urlaub, B. Abel (C 2)
Atmospheric Pressure Free Liquid Infrared MALDI Mass Spectrometry: Toward a combined ESI/MALDILiquid Chromatography Interface
Anal. Chem., 81, 443-452, 2009

O. Link, E. Vöhringer-Martinez, E. Lugovoj, Y. Liu, K. Siefermann, M. Faubel, H. Grubmüller, R. B. Gerber, Y. Miller, B. Abel (C 2)
Ultrafast phase transitions in metastable water near liquid interfaces
Faraday Disc., 141, 67-79, 2009


2008

C. Peth, F. Barkusky and K. Mann (C 4)
Near-edge x-ray absorption fine structure measurements using a laboratory-scale XUV source
J. Phys. D: Appl. Phys. 41 105202, 2008

M. Scheel, R. Seemann, M. Brinkmann, M. DI Michiel, A. Sheppard, B. Breidenbach AND S. Herminghaus (C 4)
Morphological clues to wet granular pile stability
Nature materials, Published online: 10 February 2008

S. Pankin, A. K. Hartmann and T Salditt (C 4)
X-Ray Propagation in Tapered Waveguides: Simulation and Optimization
Optics Communication 281 (2008) 2779–2783

A. Kohlstedt, S. Kalbfleisch, T. Salditt, M. Reiche, U. Gösele, E. Lima, P. Willmott (C 4)
Two-dimensional X-ray waveguides: fabrication by wafer-bonding process and characterization
Appplied Physics A 91, 7-12(2008)

G. Groenhof, L. V. Schäfer, M. Boggio-Paqua, H. Grubmüller, and M. A. Robb (B 4)
Arginine52 controls the photoisomerization process in Photoactive Yellow Protein
J. Am. Chem. Soc., 130, 3250-3251, 2008

R. Schmidt, C. A. Wurm, S. Jakobs, J. Engelhardt, A. Egner & S. W. Hell (A 1)
Spherical nanosized focal spot unravels the interior of cells
NATURE METHODS (PUBLISHED ONLINE 18. MAY 2008)

T. Salditt, S.P. Krüger, C. Fuhse, and C. Bähtz (C 1)
High-Transmission Planar X-Ray Waveguides
Physical Review Letters 100, 148401 (2008)(Project C5)

E. Nováková, G. Mitrea, C. Peth, J. Thieme, K. Mann and T. Salditt (Project B5, C1, C4) (C 1)
Solid supported multicomponent lipid membranes studied by x-ray spectromicroscopy
Biointerphases 3(2) June 2008

W. Quevedo, M. Petri and S. Techert (B 3)
Home-based time-resolved photo small angle X-ray diffraction and its applications
ZEITSCHRIFT FUR KRISTALLOGRAPHIE 223 (2008)

C. Peth (C 1)
XUV-Laserplasmaquellen für die Absorptions-Spektroskopie und zeitaufgelöste Röntgenbeugung (Dissertation zur Erlangung des Doktorgrades)
SV Sierke Verlag, 2008

N.-A. Lakomek, K. F. A. Walter, C. Farès, O. F. Lange, B. L. de Groot, H. Grubmüller, R. Brüschweiler, A. Munk, S. Becker, J. Meiler, C. Griesinger, (A 4)
Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.
Journal of Biomolecular NMR, 41, 139-155, 2008

R. Walder, C. F. Schmidt, and M. Dennin (A 3)
Combined marco- and microrheometer for use with Langmuir monolayers
Review of scientific instruments, 79, 063905, 2008

M. Atakhorrami, D. Mizuno, G. H. Koenderink, T. B. Liverpool, F. C. MacKintosh, C. F. Schmidt (A 3)
Short-time inertial response of viscoelastic fluids measured with Brownian motion and with active probes
Physical Review E, 77, 061508-13, 2008

N. Nijenhuis, D. Mizuno, C. F. Schmidt, H. Vink, J. A. E. Spaan (A 3)
Microrheology of Hyaluronan Solutions: Implications for the Endothelial Glycocalyx
Biomacromolecules, Vol. 9, No. 9, 2008

D. Mizuno, D. A. Head, F. C. MacKintosh, C. F. Schmidt (A 3)
Active and Passive Microrheology in Equilibrium and Nonequilibrium Systems
Macromolecules, 41, 7194-7202, 2008

G. Lotze (A 3)
Röntgenanalyse der Amyloid-Aggregation am Modellprotein Insulin
Diplomarbeit

W. Quevedo, M. Petri, G. Busse, S. Techert (B 3)
On the mechanism of photoinduced phase transitions in ternary liquid crystal systems near thermal equilibrium.
Journal of Chemical Physics, 129, 024502, 2008

A. Beerlink, P.-J. Wilbrandt, E. Ziegler, D. Carbone, T.H. Metzger, and T. Salditt (C 1)
X-ray Structure Analysis of Free-Standing Lipid Membranes Facilitated by Micromachined Apertures
Langmuir 24 (9), 4952-4958, 2008

T. Hohage, K. Giewekemeyer, T. Salditt (C 1)
Iterative reconstrucition of a refractive-index profile from x-ray or neutron reflectivity measurements
Physical Review E, 77, 051604, 2008

S. Jabbari-Farouji, D. Mizuno, D. Derks, G. H. Wegdam, F. C. MacKintosh3, C. F. Schmidt3,5 and D. Bonn (A 3)
Effective temperatures from the fluctuation-dissipation measurements in soft glassy materials
EPL, 84 (2008) 20006, doi: 10.1209/0295-5075/84/20006

Y. Iwashita, C. Bahr, C. Priest, S. Herminghaus, R. Seemann (A 3)
Dynamic x-ray optics with microfluidics: stablization of gas bubbles by surface ordering and freezing
Proceedings of the 1st European Conference on Microfluidics - Microfluidics 2008 - Bolgona, December 10-12, 2008

N. Bissantz, B. A. Mair and A. Munk (A 4)
A statistical stopping rule for MLEM reconstructions in PET
IEEE Nucl. Sci. Symp. Conf. Rec., 8, 4198-4200, 2008

A. Bögehold (A 3)
Kinetische Studien zur Bildung von Insulinfibrillen mittels Flüssigstrahldesorptions-Massenspektrometrie (Dissertation zur Erlangung des Doktorgrades


2007

A. Egner, C. Geisler, C. von Middendor, H. Bock, D. Wenzel, R. Medda, M. Andresen, A. Stiel, S. Jakobs, C. Eggeling, A. Schoenle, S. W. Hell (A 1)
Fluorescence nanoscopy in whole cells by asynchronous localization of photoswitching emitters
Biophys. J., 93, 3285 - 3290, 2007

O. Ivanyshyn (C 2)
Shape reconstruction of acoustic obstacles from the modulus of the far eld pattern
Inverse Probl. Imaging, 1, 609-622, 2007

C. Peth, A. Kalinin, F. Barkusky, K. Mann, J. P. Toennies, L. Y. Rusin (C 4)
XUV laser- plasma source based on solid Ar lament
Rev. Sci. Instr., 78, 103509, 2007