Training a new generation of scientists with expertise in establishing and using tools for studying gene function in emerging model organisms
The core aim of this RTG is to train a new generation of scientists in the unusually broad range of techniques required to realize the new opportunities provided by emerging model systems. The biology students will apply emerging tools such as single molecule in situ hybridizations and in vivo imaging, will perform genome editing to generate transgenic animals and use RNAi gene knock-down experiments to study the function of individual genes. Importantly, the students will join the GönomiX’s team ongoing efforts of establishing novel methodology in emerging model systems. Further, they will become experts for GRN and gene function research by applying a selection of transcriptomics, single cell sequencing, open chromatin and 3D chromatin conformation analyses and perform the bioinformatics analysis of multi-omics data. The bioinformatics students will develop new methods for cross-species GRN comparison, which will be applied in collaboration to the biology students’ data.Key measures
Kick-off meeting and yearly retreats to foster interactions within the teamThe RTG starts with an intensive three-week kick-off meeting that includes basic training, lab visits, and social events to build a strong team spirit. Yearly retreats are then held for students and PIs to discuss project progress, scientific background, and challenges, ensuring close interactions within the group.
As part of the regular monthly meetings, the GönomiX Seminar series features invited international speakers. Students are encouraged to invite and host these experts and to meet with them after their talks for feedback on projects and career advice.
In regular cutting-edge workshops all participants find, present, and discuss new papers and preprints on emerging technologies. This workshop is designed to keep the team at the forefront of the field and to critically discuss how new developments might be applied to their own research.
The RTG will hold yearly discussions for the entire team to share experiences with AI tools for data analysis, literature research, and other academic activities. This activity is intended to keep all members up to date with the dynamic opportunities that AI provides.
Students receive thorough bioinformatics training that starts with a joint one-week basic course and is followed by individualized, project-related advanced training tailored to their specific needs and prior knowledge. This is supplemented by individual counseling and support from the RTG's bioinformatics experts.
Students participate in peer forums (without PIs) to discuss topics like time management and work-life balance and are encouraged to engage in peer training and self-organized "clubs" for bioinformatics. They are also actively involved in the RTG's organization by selecting topics and experts for seminars and organizing an international symposium.
Students receive basic training in public outreach, beginning with a two-day SciComm workshop on science communication and media interaction. Interested students can then optionally pursue their own SciComm project, such as designing a museum exhibit, developing children's activities, or participating in a science slam.
The "GönomiX student award" provides start-up funding for one or two of the most excellent students per cohort to support their scientific career ambitions. This award includes funding for up to 8 months after their defense, allowing them to define an independent research area and write grant applications for a new project.